An efficient weighted tag SNP-set analytical method in genome-wide association studies

BMC Genomic Data

Table 2 Simulation parameters in scenarios 2-9

Scenario	No. of causal SNP	Causal SNP	The position of causal SNP	Genotyped	MAF ¹	Mean R ² with the genotyped SNPs ²
2	1	Each of all the 34 SNPs
3	2	rs977003	46313002	Yes	0.449	0.0853
3	2	rs9534511	46366581	Yes	0.442	0.178
4	2	rs3803189	46306571	Yes	0.107	0.0474
4	2	rs977003	46313002	Yes	0.449	0.0853
5	2	rs3803189	46306571	Yes	0.107	0.0474
5	2	rs731779	46350039	Yes	0.161	0.2478
6	2	rs9526246	46347862	No	0.462	0.2164
6	2	rs9534511	46366581	Yes	0.442	0.178
7	2	rs3803189	46306571	Yes	0.107	0.0474
7	2	rs9526246	46347862	No	0.462	0.2164
8	2	rs3803189	46306571	Yes	0.107	0.0474
8	2	rs3742278	46317578	No	0.158	0.0535
9	2	rs6561333	46318313	No	0.466	0.1127
9	2	rs9526246	46347862	No	0.462	0.2164

ISSN: 2730-6844