From: An efficient weighted tag SNP-set analytical method in genome-wide association studies
Scenario | No. of causal SNP | Causal SNP | The position of causal SNP | Genotyped | MAF 1 | Mean R 2 with the genotyped SNPs 2 |
---|---|---|---|---|---|---|
2 | 1 | Each of all the 34 SNPs | Â | Â | Â | Â |
3 | 2 | rs977003 | 46313002 | Yes | 0.449 | 0.0853 |
rs9534511 | 46366581 | Yes | 0.442 | 0.178 | ||
4 | 2 | rs3803189 | 46306571 | Yes | 0.107 | 0.0474 |
rs977003 | 46313002 | Yes | 0.449 | 0.0853 | ||
5 | 2 | rs3803189 | 46306571 | Yes | 0.107 | 0.0474 |
rs731779 | 46350039 | Yes | 0.161 | 0.2478 | ||
6 | 2 | rs9526246 | 46347862 | No | 0.462 | 0.2164 |
rs9534511 | 46366581 | Yes | 0.442 | 0.178 | ||
7 | 2 | rs3803189 | 46306571 | Yes | 0.107 | 0.0474 |
rs9526246 | 46347862 | No | 0.462 | 0.2164 | ||
8 | 2 | rs3803189 | 46306571 | Yes | 0.107 | 0.0474 |
rs3742278 | 46317578 | No | 0.158 | 0.0535 | ||
9 | 2 | rs6561333 | 46318313 | No | 0.466 | 0.1127 |
rs9526246 | 46347862 | No | 0.462 | 0.2164 |