Table 5 Sources of genome sequences used in this study

Arabidopsis thaliana

http://www.arabidopsis.org/

Oryza sativa L. ssp.japonica

http://rice.plantbiology.msu.edu/

Zea mays

http://www.maizegdb.org/

Sorghum bicolor

http://www.phytozome.net/sorghum.php

Oryza sativa L. ssp. indica

http://rice.genomics.org.cn/rice/link/download.jsp

Brachypodium distachyon

192

ftp://ftp.jgi-psf.org/pub/compgen/phytozome/v9.0/Bdistachyon/

Foxtail millet

http://foxtailmillet.genomics.org.cn/page/species/download.jsp

Phyllostachys heterocycla

http://202.127.18.221/bamboo/down.php

Triticum urartu

http://www.ncbi.nlm.nih.gov/sra/SRX047327

Aegilops tauschii

http://www.ncbi.nlm.nih.gov/sra/SRX047430

Oryza sativa (indica cultivar-group) PA64

2013.8.13

ftp://public.genomics.org.cn/BGI/rice_seq/PA64s/

Cucumis sativus

http://cucumber.genomics.org.cn/page/cucumber/index.jsp

Glycine max

http://www.soybase.org/dlpages/

Sweetorange Citrus sinensis

2012.11.29

http://citrus.hzau.edu.cn/orange/download/data.php

Malus apple

http://www.rosaceae.org/data/download