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Table 3 The most frequent motif based on length

From: Genome-wide distribution comparative and composition analysis of the SSRs in Poaceae

Motif length

 

Dimer

Trimer

Tetramer

Pentamer

Hexamer

Heptamer

Species

Oryza sativa L. ssp. indica

motif

ta

ga

ggc

gag

gatc

tatt

aaaag

taaaa

tctttt

aaaata

ttttatt

aagaaaa

number

207,422

134,238

166,702

48,150

18,631

17,477

6,159

5,168

26,483

22,309

6,381

5,432

Oryza sativa L. ssp.japonica

motif

ta

ga

ggc

gag

gatc

tatt

aaaag

taaaa

tctttt

aaaata

ttttatt

aagaaaa

number

216,603

132,553

169,394

49,836

17,713

16,079

6,275

5,189

24,246

21,107

6,381

4,891

Phyllostachys heterocycla

motif

ta

ga

ggc

ctt

tatt

atac

taaaa

aaaag

aaaata

tctttt

ttttatt

gaggagg

number

521,497

469,501

118,594

108,529

70,239

49,365

29,112

13,984

72,939

52,814

12,708

8,818

Brachypodium distachyon

motif

ga

ta

ggc

ctt

tgca

tatt

taaaa

aaaag

tctttt

aaaata

aagaaaa

ttttatt

number

38,348

21,589

52,062

26,219

13,804

10,600

2,838

2,686

12,970

7,543

2,621

1,640

Zea mays

motif

ta

ga

ctt

ggc

tatt

tgca

aaaag

taaaa

tctttt

gagccc

aggaagc

ctgcttc

number

285,957

244,863

190,564

103,855

77,682

33,766

16,133

13,116

113,450

51,720

11,119

11,111

Foxtail millet

motif

ga

ta

ggc

gag

agaa

gagg

aaaag

taaaa

tctttt

aaaata

ttttatt

aagaaaa

number

90,655

45,569

63,656

35,468

11,457

10,635

3,308

1,537

15,511

10,527

3,349

3,064

Sorghum bicolor

motif

ta

ga

ggc

att

tatt

tgca

taaaa

aaaag

aaaata

tctttt

aggggcc

ggaccgg

number

275,228

102,404

66,278

65,832

60,105

18,540

4,857

4,831

54,185

35,085

12,765

12,699

Aegilops tauschii

motif

ga

gt

ctt

gag

tatt

tgca

taaaa

aaaag

tctttt

aaaata

ttttatt

aagaaaa

number

556,203

301,146

297,281

208,816

80,376

61,754

30,819

19,290

109,440

83,782

21,296

20,412

Triticum urartu

motif

ga

ta

ctt

gag

tatt

tgca

taaaa

aaaag

tctttt

aaaata

ggtggtg

ttttatt

number

629,789

308,771

285,749

191,802

109,305

54,928

26,034

20,862

109,022

107,694

32,306

22,936

Arabidopsis thaliana

motif

ta

ga

ctt

aac

tatt

agaa

taaaa

gtttt

aaaata

tctttt

taaaccc

ttttatt

number

49,195

29,738

35,167

9,971

10,479

6,064

3,514

1,623

11,160

9,407

2,845

2,498