From: Genome-wide distribution comparative and composition analysis of the SSRs in Poaceae
Motif length | Dimer | Trimer | Tetramer | Pentamer | Hexamer | Heptamer | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Species | |||||||||||||
Oryza sativa L. ssp. indica | motif | ta | ga | ggc | gag | gatc | tatt | aaaag | taaaa | tctttt | aaaata | ttttatt | aagaaaa |
number | 207,422 | 134,238 | 166,702 | 48,150 | 18,631 | 17,477 | 6,159 | 5,168 | 26,483 | 22,309 | 6,381 | 5,432 | |
Oryza sativa L. ssp.japonica | motif | ta | ga | ggc | gag | gatc | tatt | aaaag | taaaa | tctttt | aaaata | ttttatt | aagaaaa |
number | 216,603 | 132,553 | 169,394 | 49,836 | 17,713 | 16,079 | 6,275 | 5,189 | 24,246 | 21,107 | 6,381 | 4,891 | |
Phyllostachys heterocycla | motif | ta | ga | ggc | ctt | tatt | atac | taaaa | aaaag | aaaata | tctttt | ttttatt | gaggagg |
number | 521,497 | 469,501 | 118,594 | 108,529 | 70,239 | 49,365 | 29,112 | 13,984 | 72,939 | 52,814 | 12,708 | 8,818 | |
Brachypodium distachyon | motif | ga | ta | ggc | ctt | tgca | tatt | taaaa | aaaag | tctttt | aaaata | aagaaaa | ttttatt |
number | 38,348 | 21,589 | 52,062 | 26,219 | 13,804 | 10,600 | 2,838 | 2,686 | 12,970 | 7,543 | 2,621 | 1,640 | |
Zea mays | motif | ta | ga | ctt | ggc | tatt | tgca | aaaag | taaaa | tctttt | gagccc | aggaagc | ctgcttc |
number | 285,957 | 244,863 | 190,564 | 103,855 | 77,682 | 33,766 | 16,133 | 13,116 | 113,450 | 51,720 | 11,119 | 11,111 | |
Foxtail millet | motif | ga | ta | ggc | gag | agaa | gagg | aaaag | taaaa | tctttt | aaaata | ttttatt | aagaaaa |
number | 90,655 | 45,569 | 63,656 | 35,468 | 11,457 | 10,635 | 3,308 | 1,537 | 15,511 | 10,527 | 3,349 | 3,064 | |
Sorghum bicolor | motif | ta | ga | ggc | att | tatt | tgca | taaaa | aaaag | aaaata | tctttt | aggggcc | ggaccgg |
number | 275,228 | 102,404 | 66,278 | 65,832 | 60,105 | 18,540 | 4,857 | 4,831 | 54,185 | 35,085 | 12,765 | 12,699 | |
Aegilops tauschii | motif | ga | gt | ctt | gag | tatt | tgca | taaaa | aaaag | tctttt | aaaata | ttttatt | aagaaaa |
number | 556,203 | 301,146 | 297,281 | 208,816 | 80,376 | 61,754 | 30,819 | 19,290 | 109,440 | 83,782 | 21,296 | 20,412 | |
Triticum urartu | motif | ga | ta | ctt | gag | tatt | tgca | taaaa | aaaag | tctttt | aaaata | ggtggtg | ttttatt |
number | 629,789 | 308,771 | 285,749 | 191,802 | 109,305 | 54,928 | 26,034 | 20,862 | 109,022 | 107,694 | 32,306 | 22,936 | |
Arabidopsis thaliana | motif | ta | ga | ctt | aac | tatt | agaa | taaaa | gtttt | aaaata | tctttt | taaaccc | ttttatt |
number | 49,195 | 29,738 | 35,167 | 9,971 | 10,479 | 6,064 | 3,514 | 1,623 | 11,160 | 9,407 | 2,845 | 2,498 |