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Table 5 Results from conditional search, restricted to pairs of previously implicated SNPs

From: Filter-free exhaustive odds ratio-based genome-wide interaction approach pinpoints evidence for interaction in the HLA region in psoriasis

First GWAS SNP

Second GWAS SNP

FORCE

PLINK FastEpistasis

rs number

Chromosomal location

rs number

Chromosomal location

I OR

Empirical p-value

p-value

rs10484554

6p21.33

rs27524

5q15

6.846

0.008882

0.003095

rs10484554

6p21.33

rs3134792

6p21.33

1.068

0.3014

0.007746

rs2201841

1p31.3

rs3213094

5q33.3

4.737

0.02952

0.012373

rs3134792

6p21.33

rs4795067

17q11

3.188

0.07419

0.012783

rs20541

5q31

rs17716942

2q24

6.987

0.008212

0.013389

rs702873

2p16

rs4795067

17q11

3.414

0.06466

0.014129

rs10484554

6p21.33

rs4795067

17q11

2.597

0.1071

0.018096

rs610604

6q23

rs17716942

2q24

6.591

0.01025

0.023261

rs3213094

5q33.3

rs12580100

12q13.2

5.132

0.02349

0.028993

rs4649203

1p36

rs240993

6q21

2.270

0.1319

0.037791

rs4649203

1p36

rs702873

2p16

1.237

0.266

0.041136

rs3134792

6p21.33

rs27524

5q15

11.840

0.000581

0.041483

rs702873

2p16

rs2546890

5q33.3

0.804

0.37

0.041729

rs27524

5q15

rs17716942

2q24

5.280

0.02158

0.045812

rs610604

6q23

rs6701216

1q21

4.289

0.03837

0.057701

rs2201841

1p31.3

rs2546890

5q33.3

2.587

0.1077

0.059206

rs27524

5q15

rs7993214

13q14.11

3.596

0.05793

0.059609

rs3134792

6p21.33

rs3213094

5q33.3

2.610

0.1062

0.072999

rs702873

2p16

rs2201841

1p31.3

1.669

0.1964

0.083717

rs10484554

6p21.33

rs12580100

12q13.2

2.535

0.1113

0.086631

rs4649203

1p36

rs6701216

1q21

3.518

0.06072

0.086671

rs2201841

1p31.3

rs27524

5q15

1.666

0.1968

0.088785

rs4112788

1q21.3

rs7993214

13q14.11

1.546

0.2137

0.090419

rs240993

6q21

rs7993214

13q14.11

1.896

0.1685

0.096038

rs6701216

1q21

rs8016947

14q13

1.087

0.2971

0.100508