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Table 1 Contingency table under a dominant model

From: Filter-free exhaustive odds ratio-based genome-wide interaction approach pinpoints evidence for interaction in the HLA region in psoriasis

SNP1 SNP2 Cases Controls
AA BB α β
AA Bb or bb γ δ
Aa or aa BB ε ζ
Aa or aa Bb or bb η θ
  1. Major alleles are respectively A and B for each SNP and minor alleles a and b. The risk allele is assumed to be the minor allele.