From: Accuracy of genome-wide imputation in Braford and Hereford beef cattle
Concordance rate | Allelic R ^{2} | ||||
---|---|---|---|---|---|
Source | Mean | Scheffé test ^{3} | Source | Mean | Scheffé test ^{3} |
Algorithm ^{4} (P-value < 0.0001) | Algorithm ^{4} (P-value < 0.0001) | ||||
FImpute | 1.340 | a | FImpute | 1.283 | a |
Beagle | 1.306 | b | Beagle | 1.244 | b |
Panel ^{5} (P-value < 0.0001) | Panel ^{5} (P-value < 0.0001) | ||||
15K | 1.402 | a | 15K | 1.368 | a |
20K | 1.347 | b | 20K | 1.295 | b |
8K | 1.345 | c | 8K | 1.292 | c |
6K | 1.332 | d | 6K | 1.276 | d |
3K | 1.189 | e | 3K | 1.085 | e |
Scenario ^{6} (P-value 0.0147) | Scenario ^{6} (P-value 0.0277) | ||||
NE-P | 1.323 | a | NE-P | 1.264 | a |
NNE-P | 1.323 | a | NE-NP | 1.263 | a |
NE-NP | 1.323 | a | NNE-P | 1.264 | a |
NNE-NP | 1.322 | a | NNE-NP | 1.262 | a |
Algorithm*Panel (P-value < 0.0001) | Algorithm*Panel (P-value 0.0265) | ||||
FImpute - 15K | 1.420 | a | FImpute -15K | 1.388 | a |
Beagle - 15K | 1.384 | b | Beagle - 15K | 1.347 | b |
FImpute - 20K | 1.365 | c | FImpute - 20K | 1.316 | c |
FImpute - 8K | 1.362 | d | FImpute - 8K | 1.312 | d |
FImpute - 6K | 1.349 | e | FImpute - 6K | 1.295 | e |
Beagle - 20K | 1.330 | f | Beagle - 20K | 1.275 | f |
Beagle - 8K | 1.328 | f | Beagle - 8K | 1.272 | f |
Beagle - 6K | 1.316 | g | Beagle - 6K | 1.257 | g |
FImpute - 3K | 1.204 | h | FImpute - 3K | 1.104 | h |
Beagle - 3K | 1.174 | i | Beagle - 3K | 1.067 | i |