Table 3 Imputation scenarios used in the study
From: Accuracy of genome-wide imputation in Braford and Hereford beef cattle
Imputation | Software | Pedigree information | Nellore genotypes | Method | |
|---|---|---|---|---|---|
From | To | ||||
3K, 6K, 8K,15K, 20K | 50K | FImpute | Yes | Yes | One-step |
No | |||||
No | Yes | ||||
No | |||||
Beagle | No | Yes | |||
No | |||||
3K, 6K, 8K,15K, 20K | 777K | FImpute | Yes | Yes | One-step |
No | |||||
Two-step | |||||
Beagle | No | ||||
50K, 90iK, 90tK | 777K | FImpute | Yes | Yes | One-step |
No | |||||
Beagle | No | ||||