Associations between variants of the HALgene and milk production traits in Chinese Holstein cows

BMC Genomic Data

Table 2 Genotypes, allele frequencies and the significance of deviations from HWE ¹

Submission number	Location of SNP	Position on Btau_4.6.1	Allele substitution	Genotype	Genotype frequencies	MAF ²	P -value ³
974768522	Promoter	64547553	C > T	CC	0.426	0.339	0.253
				CT	0.468
				TT	0.106
974768523	Exon1	64547394	T > C	TT	0.527	0.281	0.257
				TC	0.385
				CC	0.086
974768524	Intron2	64546261	T > C	TT	0.588	0.251	0.0004
				TC	0.323
				CC	0.089
974768525	Exon5	64545391	C > T	CC	0.647	0.196	0.898
				CT	0.314
				TT	0.039
974768527	Exon8	64543949	G > A	GG	0.523	0.282	0.307
				GA	0.389
				AA	0.088
974768529	Intron11	64537682	A > G	AA	0.078	0.267	0.370
				AG	0.378
				GG	0.544
974768531	Intron17	64529509	T > C	TT	0.433	0.327	0.018
				TC	0.481
				CC	0.086
974768533	3′UTR	64525640	C > A	CC	0.091	0.307	0.680
				CA	0.433
				AA	0.476
974768534	3′UTR	64524579	C > T	CC	0.486	0.304	0.850
				CT	0.420
				TT	0.094

ISSN: 2730-6844