Figure 1
From: Hypothesis testing of meiotic recombination rates from population genetic data
Interleaved HMM. The interleaved HMM with coupled hidden chains used in the OVERPAINT model to compute 
[adapted from Figure two(b) of [4]]. h k+1,j is the allele state at the j th site of haplotype h k+1. X
j
and G
j
denote the j th hidden state of the crossover and gene conversion chain, respectively, and their joint configuration determines the index of the haplotype from which h k+1,j is copied.