Patterns of genetic variation and the role of selection in HTR1A and HTR1B in macaques (Macaca)

BMC Genomic Data

Table 1 Indices of within-species genetic diversity found in HTR1A for five species of macaque

	Mul^a,b			Fas^a,c		Fus^a	Nem^a	Syl^a
	China	India	Total	Orig.	Mod.
Polymorphisms	17	15	18	28	7	6	27	2
SNP	15	13	16	26	7	6	25	2
Indel	2	2	2	2	0	0	2	0
Coding (1269 bp)	3	3	4	4	0	2	5	1
Nonsynonymous	0	0	0	2	0	1	1	0
Noncoding (1850 bp)	14	12	14	22	7	4	22	1
Theta (S)	4.65	3.57	3.76	7.13	1.97	1.65	8.28	0.77
Theta (π)	5.72	3.28	4.65	5.82	2.27	1.82	9.95	1.07
Tajima's D	-0.78	0.28	0.25	-0.88	0.49	0.33	0.46	1.03
p-value	> 0.1	> 0.1	> 0.1	> 0.1	> 0.1	> 0.1	> 0.1	> 0.1

^aMul: M. mulatta; Fas: M. fascicularis; Fus: M. fuscata; Nem: M. nemestrina; Syl: M. sylvanus.
^bFor M. mulatta, indices for both the Chinese and the Indian populations are shown separately, as well as indices for the species as a whole.
^cFor M. fascicularis, indices for HTR1A are shown both with and without the outlier.

ISSN: 2730-6844