From: Consequences of splitting whole-genome sequencing effort over multiple breeds on imputation accuracy
MAF range | n alleles1 | n variants | HOL80 | MIX140 | ||
---|---|---|---|---|---|---|
 |  |  | MAF | r | MAF | r |
> 0.1 | > 16 | 525,647 | 0.27237 | 0.92 | 0.27159 | 0.93 |
0.05625-0.1 | 9-16 | 143,313 | 0.07639 | 0.78 | 0.08784 | 0.79 |
0.03125-0.05 | 5-8 | 94,021 | 0.04073 | 0.66 | 0.05596 | 0.69 |
0.01875-0.025 | 3-4 | 56,235 | 0.02187 | 0.56 | 0.03884 | 0.62 |
0.0125 | 2 | 25,698 | 0.01250 | 0.42 | 0.03216 | 0.56 |
0.00625 | 1 | 25,101 | 0.00625 | 0.19 | 0.02385 | 0.45 |