Table 1 Characteristics of GWGGI
From: GWGGI: software for genome-wide gene-gene interaction analysis
| Â | T1D | CAD | ||
|---|---|---|---|---|
LRMW | TAMW | LRMW | TAMW | |
# of SNPs | 2184 | 2184 | 459 K | 459 K |
# of samples | 4901 | 4901 | 4864 | 4864 |
Memory usage | 7 Mb | 7 Mb | 731 M | 738 M |
Loading time | <1’s | <1’s | 3 min | 3 min |
Analysis time | 1.5 min | 3 min | 3.5 hr | 10 hr |
Selected SNPs | 7 SNPs | 472 SNPs | 6 SNPs | 57 SNPs |
AUC | 0.844 | 0.776 | 0.672 | 0.719 |
P-value* | 1.12e-268 | 3.06e-138 | 1.78e-33 | 4.11e-65 |