Table 3 QTL regions associated with feed efficiency traits in Nelore cattle
From: Identification of genomic regions associated with feed efficiency in Nelore cattle
Phenotype | SNP window [start and end SNP] | Number SNP in window | % Variance explained by SNP window | Chr | Map position [UMD 3.1 bovine assembly] | Functional candidate genes |
|---|---|---|---|---|---|---|
ADG | rs133645581-rs137479730 | 231 | 4.94 | 9 | 22019753... 22993318 | - |
| Â | rs134217291- rs43586239 | 245 | 2.91 | 1 | 156005880...156999077 | - |
| Â | rs134861070-rs133661192 | 176 | 2.33 | 16 | 31007509... 31998663 | - |
| Â | rs109785180- rs42314597 | 181 | 1.62 | 7 | 28006905... 28999205 | MARCH3, ALDH7A1 |
| Â | rs110427506-rs109577271 | 215 | 1.31 | 3 | 8007708... 8998553 | APOA2,, USP21, UFC1 |
| Â | rs135933205-rs136131764 | 270 | 1.01 | 14 | 6007610... 6998560 | - |
DMI | rs133031353-rs42739324 | 237 | 3.76 | 24 | 32007830...32998471 | HRH4, ZNF521 |
| Â | rs134105133-rs133615999 | 161 | 2.00 | 13 | 8009711...8998026 | - |
| Â | rs133460769-rs109902312 | 255 | 1.29 | 9 | 8000493...8996276 | - |
FCR | rs110424374-rs133308150 | 73 | 6.06 | 12 | 27042151...27967155 | - |
| Â | rs41942246-rs134122046 | 191 | 5.99 | 20 | 36002437...36994188 | GDNF |
| Â | rs42594525-rs109404921 | 182 | 1.52 | 15 | 58000208...58999275 | LIN7C |
| Â | rs109105703 -rs136356118 | 189 | 1.40 | 18 | 15002281...15989210 | - |
FE | rs133645581-rs137479730 | 231 | 2.58 | 9 | 22019753...22993318 | - |
| Â | rs134914044-rs42277860 | 203 | 2.30 | 1 | 21002744...21985704 | - |
| Â | rs136028559-rs110570158 | 250 | 1.04 | 14 | 73002666...73999191 | - |
| Â | rs109171156-rs42987702 | 255 | 1.03 | 2 | 58005318...58996319 | - |
RFI | rs132846819-rs136767848 | 217 | 1.50 | 8 | 43001055...43994362 | Â |
| Â | rs109535395-rs134508640 | 50 | 1.42 | 18 | 14008775... 14999189 | DEPP1, TUBB3 |
| Â | rs109365529-rs132654030 | 186 | 1.12 | 11 | 93000777... 93986308 | PTGS1 |
| Â | rs136295413-rs41980878 | 260 | 1.12 | 21 | 35004352... 35999673 | - |
ME | rs110886051-rs136158385 | 132 | 2.23 | 9 | 85000924...85992426 | - |
| Â | rs135793109-rs134017120 | 244 | 1.48 | 14 | 83000515...83999590 | - |
| Â | rs132642498-rs42290512 | 195 | 1.28 | 20 | 42002534...42999156 | - |
| Â | rs136695261-rs134921622 | 265 | 1.24 | 1 | 155006277...155998842 | DPH3 |
| Â | rs41681891-rs111007160 | 315 | 1.22 | 13 | 19000011...19998017 | - |
| Â | rs134217291-rs43586239 | 245 | 1.11 | 1 | 156005880...156999077 | - |
EG | rs135733781-rs136250718 | 170 | 3.42 | 10 | 82000451...82991463 | - |
| Â | rs41681891-rs111007160 | 315 | 2.01 | 13 | 19000011...19998017 | - |
| Â | rs135553767-rs133216097 | 265 | 1.73 | 20 | 58002823...58996938 | - |
| Â | rs132642498-rs42290512 | 195 | 1.39 | 20 | 42002534...42999156 | - |
| Â | rs134907990-rs135714341 | 143 | 1.14 | 28 | 29001640...29996795 | CAMK2G |
PEG | rs135793109- rs134017120 | 244 | 2.25 | 14 | 83000515...83999590 | - |
| Â | rs136639955- rs109263205 | 208 | 1.63 | 10 | 27001939...27998826 | - |
| Â | rs41681891 -rs111007160 | 315 | 1.30 | 13 | 19000011...19998017 | - |
| Â | rs42442541-rs42102604 | 324 | 1.29 | 26 | 46000238...46999583 | ADAM12 |
| Â | rs137164093 -rs137788588 | 158 | 1.10 | 3 | 55053110...55996246 | - |
| Â | rs43109937-rs135732317 | 102 | 1.08 | 1 | 18002981...18998146 | CXADR |
RGR | rs110498934...rs109401708 | 89 | 9.07 | 2 | 63002463... 63957289 | - |
| Â | rs135507221...rs136312022 | 170 | 1.72 | 12 | 64002872... 64983441 | - |
| Â | rs41576182... rs137330342 | 227 | 1.23 | 12 | 63000336... 63998631 | - |
| Â | rs137740719 ...rs132674185 | 236 | 1 | 9 | 75004071... 75998811 | MAP7, PEX7 |