No penalty | ||||||
---|---|---|---|---|---|---|
Haplotype | Frequency | Realizeda | Mean bias | Mean SE | Coverage | P < 0.05b |
001 | 0.050 | 1.094 | -0.005 | 0.08 | 0.93 | 1.00 |
101 | 0.003 | 1.155 | -0.037 | 0.38 | 0.93 | 0.77 |
010 | 0.020 | 0.016 | -0.007 | 0.14 | 0.98 | 0.02 |
011 | 0.005 | 0.023 | 0.036 | 0.30 | 0.98 | 0.02 |
100 | 0.020 | 0.006 | 0.015 | 0.14 | 1.00 | 0.00 |
110 | 0.002 | 0.084 | 0.075 | 1.14 | 0.95 | 0.05 |
111 | 0.280 | -0.007 | -0.007 | 0.03 | 0.82 | 0.18 |
Ridge penalty | ||||||
Haplotype | Frequency | Realizeda | Mean bias | Mean SE | Coverage | P < 0.05b |
001 | 0.050 | 1.094 | -0.009 | 0.07 | 0.91 | 1.00 |
101 | 0.003 | 1.155 | -0.085 | 0.61 | 0.91 | 0.62 |
010 | 0.020 | 0.016 | -0.007 | 0.013 | 0.96 | 0.04 |
011 | 0.005 | 0.023 | 0.046 | 0.23 | 0.96 | 0.04 |
100 | 0.020 | 0.006 | 0.014 | 0.12 | 0.98 | 0.02 |
110 | 0.002 | 0.084 | 0.067 | 0.40 | 0.66 | 0.34 |
111 | 0.280 | -0.007 | -0.008 | 0.03 | 0.81 | 0.19 |
Difference penalty | ||||||
Haplotype | Frequency | Realizeda | Mean bias | Mean SE | Coverage | P < 0.05b |
0 0 1 | 0.050 | 1.094 | -0.011 | 0.07 | 0.88 | 1.00 |
1 0 1 | 0.003 | 1.155 | -0.066 | 0.54 | 0.88 | 0.71 |
0 1 0 | 0.020 | 0.016 | 0.004 | 0.12 | 0.96 | 0.04 |
0 1 1 | 0.005 | 0.023 | 0.071 | 0.22 | 0.90 | 0.10 |
1 0 0 | 0.020 | 0.006 | 0.017 | 0.12 | 0.98 | 0.02 |
1 1 0 | 0.002 | 0.084 | 0.069 | 0.37 | 0.57 | 0.43 |
1 1 1 | 0.280 | -0.007 | -0.009 | 0.03 | 0.82 | 0.18 |