No penalty | ||||||
---|---|---|---|---|---|---|
Haplotype | Frequency | Realizeda | Mean bias | Mean SE | Coverage | P < 0.05b |
010 | 0.020 | 0.741 | 0.014 | 0.44 | 0.95 | 0.43 |
011 | 0.005 | 0.593 | -0.663 | 2971.81 | 0.95 | 0.21 |
110 | 0.002 | 0.000 | -0.971 | 14514.13 | 0.96 | 0.10 |
111 | 0.280 | 0.713 | 0.018 | 0.09 | 0.79 | 1.00 |
001 | 0.050 | 0.012 | 0.050 | 0.28 | 0.91 | 0.09 |
100 | 0.020 | 0.038 | 0.010 | 33.23 | 0.95 | 0.05 |
101 | 0.003 | 0.000 | -2.212 | 7674.81 | 0.90 | 0.10 |
Ridge penalty | ||||||
Haplotype | Frequency | Realizeda | Mean bias | Mean SE | Coverage | P < 0.05b |
010 | 0.020 | 0.741 | -0.135 | 0.73 | 0.85 | 0.18 |
011 | 0.005 | 0.593 | -0.359 | 1.91 | 0.74 | 0.03 |
110 | 0.002 | 0.000 | -0.557 | 1.00 | 0.39 | 0.19 |
111 | 0.280 | 0.713 | -0.010 | 0.11 | 0.83 | 1.00 |
001 | 0.050 | 0.012 | 0.037 | 0.24 | 0.87 | 0.13 |
100 | 0.020 | 0.038 | 0.070 | 1.08 | 1.00 | 0.00 |
101 | 0.003 | 0.000 | -0.649 | 2.16 | 0.89 | 0.11 |
Difference penalty | ||||||
Haplotype | Frequency | Realizeda | Mean bias | Mean SE | Coverage | P < 0.05b |
010 | 0.020 | 0.741 | -0.008 | 0.62 | 0.98 | 0.35 |
011 | 0.005 | 0.593 | -0.132 | 1.39 | 1.00 | 0.03 |
110 | 0.002 | 0.000 | -0.272 | 1.00 | 1.00 | 0.15 |
111 | 0.280 | 0.713 | 0.008 | 0.12 | 0.89 | 1.00 |
001 | 0.050 | 0.012 | 0.122 | 0.24 | 0.79 | 0.21 |
100 | 0.020 | 0.038 | 0.131 | 0.88 | 0.93 | 0.07 |
101 | 0.003 | 0.000 | -0.301 | 1.68 | 0.91 | 0.09 |