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Table 2 Genetic markers used in the linkage analysis [18, 27, 28, 11]

From: Equine Multiple Congenital Ocular Anomalies maps to a 4.9 megabase interval on horse chromosome 6

Marker

Position (bp)

Ensembl [18]

Forward primer (5'-3')/

Reverse primer (5'-3')

Accession number/Reference

UM015

34558444

AGTCTGGCTGAGGATACTG

GGTGAGAAAGGAGATAAATG

GenBank: AF195133

Chowdhary et al. [27]

UCDEQ465

61228896

AACCAGTCCCTACATAGAAC

CTCACAACCAAGCATACA

GenBank: U67414

Chowdhary et al. [27]

TKY570

66793583

TCTCCGCAGCTCAAACTTTC

CTCAAAGGTGCCTGAGAAGC

GenBank: AB103788

Tozaki et al. [28]

TKY412

70589360

GTGTGGGACAGGAAGTTTGG

ATTCTTGGGTCCCCTCATCT

GenBank: AB103630

Tozaki et al. [28]

UPP5

71164435

GCACAGTCTAGGGGGTGTGT

TCTGGGCCTGGGTAGGTAGT

Probe ID: 9710436

This study

Pyroseq. PCR primers-PMEL17 ex11

Pyroseq. Seq primer-PMEL17 ex11

73665164

73665164

Biotin-TCCATTGCTTACCAGTTTCCTT

CTCACCAAAGGGGGAAGAG

GCCCTGCTTCATAAGTCTG

GenBank: DQ855465

Brunberg et al. [11]

UPP6

74667027

ATTGTACCTGGGACCCTTCC

TGTCTTTGCTTCCCAGTCCT

Probe ID: 9710437

This study

UPP7

75475262

CTTTGACACACCCTGGGAAG

CATCCACATCCTTCATTTGCT

Probe ID: 9710438

This study

UPP8

76228607

TGTCCCTGAATTCTCTGATCC

GACCTCCAGTCAAAATGAATCTG

Probe ID: 9710439

This study

TKY952

79472871

GATCGGTAAGTGTCGGGAC

TAAAATGACTGGGTGGAGAC

GenBank: AB104170

Tozaki et al. [28]

UPP9

79806071

AAAAAGAGGATTGGCAACG

TGTGTGGGGATGTAATTGGA

Probe ID: 9710440

This study