Figure 1

Genetic map of rainbow trout chromosome 10 including comparative assignments. Recombination distances are presented as total Kosambi cM for each map on the left, marker names and comparative assignments are on the right. Loci names in red bold font are ordered at LOD 4.0, loci in blue font at LOD 3.0, loci in green font at LOD 2.0, and loci in black italic at LOD 0.0. Although Omy10 did not have any loci in black font mapping at LOD 1.0, this convention is used for the whole map provided in Additional File 2. Paralogous assignments within the rainbow trout genome are presented in orange in the format Omy_1:10.0 where Omy is the three letter species designation for rainbow trout (Oncorhynchus mykiss), 1 is the chromosome number of the paralogous locus and 10.0 is its map position. Comparative assignments are similarly presented next to loci names in the format species abbreviation_chromosome number:homolog start nucleotide:homolog end nucleotide. Comparative assignments for zebrafish (DRE) are presented in purple, for medaka (OLA) in brown, for tetraodon (TNI) in light blue, and fugu (TRU) in maroon. All chromosomes are presented in this format in Additional File 2.