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Table 1 SNPs in the r2 ≥ 0.8 bin for rs16969968, sorted by genomic position, and their allele frequencies.

From: In search of causal variants: refining disease association signals using cross-population contrasts

SNP

pos_bp

gene

SNP function

Minor allele

frequency,

HapMap CEU

Minor allele

frequency,

HapMap YRI

Minor allele,

EA sample/

AA sample1

Minor allele

frequency,

EA sample

Minor allele

frequency,

AA sample

rs17483548

76517368

IREB2

LOCUS

0.408

0.00

   

rs17405217

76518204

IREB2

INTRON

0.408

0.00

   

rs17483721

76520786

IREB2

INTRON

0.408

0.175

   

rs2656052

76527987

IREB2

INTRON

0.408

0.475

C/C

0.3313

0.4580

rs7181486

76528673

IREB2

INTRON

0.408

0.175

   

rs17483929

76529431

IREB2

INTRON

0.408

0.175

   

rs17484235

76548469

IREB2

INTRON

0.408

0.00

   

rs9788721

76589924

LOC123688

INTRON

0.433

0.371

C/C

0.3452

0.3602

rs8034191

76593078

LOC123688

INTRON

0.433

0.142

C/C

0.3333

0.1595

rs10519203

76601101

LOC123688

INTRON

0.433

0.300

C/C

0.3353

0.3225

rs8031948

76603112

LOC123688

INTRON

0.432

0.103

   

rs931794

76613235

  

0.433

0.292

   

rs2036527

76638670

  

0.425

0.217

A/A

0.3323

0.2187

rs17486278

76654537

CHRNA5

INTRON

0.409

Not available

G/G

0.3294

0.2942

rs7180002

76661048

CHRNA5

INTRON

0.417

0.117

   

rs951266

76665596

CHRNA5

INTRON

0.417

0.117

A/A

0.3274

0.0858

rs16969968

76669980

CHRNA5

NONSYNON

0.424

0.00

A/A

0.3274

0.0497

rs1051730

76681394

CHRNA3

SYNON

0.4

0.110

T/T

0.3270

0.0943

rs1317286

76683184

CHRNA3

INTRON

0.405

0.297

G/G

0.3323

0.2204

rs12914385

76685778

CHRNA3

INTRON

0.43

0.198

   

rs17487223

76711042

CHRNB4

INTRON

0.433

0.067

   
  1. 1Minor allele in EA sample is the same as the minor allele in the AA sample for all genotyped SNPs