From: In search of causal variants: refining disease association signals using cross-population contrasts
SNP | pos_bp | gene | SNP function | Minor allele frequency, HapMap CEU | Minor allele frequency, HapMap YRI | Minor allele, EA sample/ AA sample1 | Minor allele frequency, EA sample | Minor allele frequency, AA sample |
---|---|---|---|---|---|---|---|---|
rs17483548 | 76517368 | IREB2 | LOCUS | 0.408 | 0.00 | |||
rs17405217 | 76518204 | IREB2 | INTRON | 0.408 | 0.00 | |||
rs17483721 | 76520786 | IREB2 | INTRON | 0.408 | 0.175 | |||
rs2656052 | 76527987 | IREB2 | INTRON | 0.408 | 0.475 | C/C | 0.3313 | 0.4580 |
rs7181486 | 76528673 | IREB2 | INTRON | 0.408 | 0.175 | |||
rs17483929 | 76529431 | IREB2 | INTRON | 0.408 | 0.175 | |||
rs17484235 | 76548469 | IREB2 | INTRON | 0.408 | 0.00 | |||
rs9788721 | 76589924 | LOC123688 | INTRON | 0.433 | 0.371 | C/C | 0.3452 | 0.3602 |
rs8034191 | 76593078 | LOC123688 | INTRON | 0.433 | 0.142 | C/C | 0.3333 | 0.1595 |
rs10519203 | 76601101 | LOC123688 | INTRON | 0.433 | 0.300 | C/C | 0.3353 | 0.3225 |
rs8031948 | 76603112 | LOC123688 | INTRON | 0.432 | 0.103 | |||
rs931794 | 76613235 | 0.433 | 0.292 | |||||
rs2036527 | 76638670 | 0.425 | 0.217 | A/A | 0.3323 | 0.2187 | ||
rs17486278 | 76654537 | CHRNA5 | INTRON | 0.409 | Not available | G/G | 0.3294 | 0.2942 |
rs7180002 | 76661048 | CHRNA5 | INTRON | 0.417 | 0.117 | |||
rs951266 | 76665596 | CHRNA5 | INTRON | 0.417 | 0.117 | A/A | 0.3274 | 0.0858 |
rs16969968 | 76669980 | CHRNA5 | NONSYNON | 0.424 | 0.00 | A/A | 0.3274 | 0.0497 |
rs1051730 | 76681394 | CHRNA3 | SYNON | 0.4 | 0.110 | T/T | 0.3270 | 0.0943 |
rs1317286 | 76683184 | CHRNA3 | INTRON | 0.405 | 0.297 | G/G | 0.3323 | 0.2204 |
rs12914385 | 76685778 | CHRNA3 | INTRON | 0.43 | 0.198 | |||
rs17487223 | 76711042 | CHRNB4 | INTRON | 0.433 | 0.067 |