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Table 2 Estimation of number of probes that respond to target and display an intensity above the background

From: Improved detection of global copy number variation using high density, non-polymorphic oligonucleotide probes

 

Probes above background in each sample

Probes and fragments above background in 5/5 samples

 

Probe count

Percentage

Probes # (%)

Fragment # (%)

 

data set 1

Sample1

12,017,471

97.47%

11,786,082

(95.59%)

1,329,822

(99.96%)

Sample2

12,025,953

97.54%

    

Sample3

12,075,266

97.94%

    

Sample4

12,092,454

98.08%

    

Sample5

12,080,046

97.97%

    
 

data set 2

Sample1

11,980,266

97.17%

11,697,525

(94.87%)

1,329,806

(99.96%)

Sample2

12,053,875

97.76%

    

Sample3

12,056,015

97.78%

    

Sample4

12,039,968

97.65%

    

Sample5

11,981,189

97.17%

    
 

data set 3

Sample1

11,965,896

97.05%

11,687,506

(94.79%)

1,329,818

(99.96%)

Sample2

12,061,150

97.82%

    

Sample3

12,027,025

97.54%

    

Sample4

12,060,619

97.82%

    

Sample5

12,040,767

97.66%

    
  1. Note: Each data set represents a replicate of 1X–5X samples.