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Table 3 Summary from validation of SNPs

From: Identification and characterisation of novel SNP markers in Atlantic cod: Evidence for directional selection

Putative SNPs

724

Put. SNPs with assay successfully made

648

Putative SNPs genotyped

594

   Failed assays

175

   SNPs w/all animals heterozygous

9

   SNPs w/all animals homozygous

92

   Polymorphic SNPs

318

Contigs with putative SNPs

415

Contigs with real SNPs

235

Contigs with:

 

   1 real SNP

172

   2 real SNPs

48

   3 real SNPs

11

   4 real SNPs

2

   5 real SNPs

2