Microsatellite based genetic diversity and relationships among ten Creole and commercial cattle breeds raised in Brazil

Egito, Andréa A; Paiva, Samuel R; Albuquerque, Maria do Socorro M; Mariante, Arthur S; Almeida, Leonardo D; Castro, Silvia R; Grattapaglia, Dario

doi:10.1186/1471-2156-8-83

Table 2 Descriptive statistics of the 22 microsatellite marker loci. Statistics are reported for each Bos subspecies separately and overall, consolidating all breeds and all animals: # alleles (N), observed heterozygosity (Ho), expected heterozygosity (He), polymorphism information content (PIC), Wright F-statistics (F_IS, F_IT, F_ST); breed differentiation detected by the marker locus under the step-wise mutation model (R_ST); statistical significance * = p < 0.05; ** = p < 0.01.

From: Microsatellite based genetic diversity and relationships among ten Creole and commercial cattle breeds raised in Brazil

	Bos taurus– Taurine breeds (n = 623)								Bos indicus– Zebuine breeds (n = 292)								Overall (n = 915)
Locus	N	Ho	He	PIC	F_IS	F_IT	F_ST	R_ST	N	Ho	He	PIC	F_IS	F_IT	F_ST	R_ST	N	Ho	He	PIC	F_IS	F_IT	F_ST	R_ST
INRA35	11	0.463	0.597	0.561	0.224**	0.233**	0.077**	0.102	12	0.788	0.830	0.806	0.050	0.065	0.047**	0.028	12	0.569	0.705	0.673	0.193**	0.202**	0.106**	0.119
HEL9	13	0.790	0.888	0.877	0.110**	0.115**	0.038**	0.075	13	0.756	0.897	0.886	0.157**	0.163**	0.021	0.035	13	0.779	0.903	0.894	0.137**	0.141**	0.044**	0.056
INRA63	8	0.643	0.680	0.622	0.055	0.066	0.083*	0.109	7	0.513	0.582	0.541	0.119*	0.126**	0.023	-0.002	8	0.602	0.732	0.683	0.177**	0.192**	0.177**	0.397
INRA37	17	0.771	0.833	0.811	0.074**	0.084**	0.067*	0.097	14	0.781	0.822	0.797	0.049	0.056*	0.022**	0.066	17	0.774	0.843	0.825	0.082**	0.089**	0.067**	0.154
ILSTS05	9	0.442	0.601	0.565	0.265**	0.277**	0.111	0.124	9	0.701	0.823	0.802	0.149**	0.156**	0.025**	0.019	9	0.523	0.730	0.703	0.284**	0.295**	0.156**	0.142
HEL5	13	0.652	0.895	0.885	0.272**	0.277**	0.045	0.081	13	0.250	0.871	0.856	0.713**	0.714**	0.010	0.052	13	0.536	0.898	0.889	0.403**	0.406**	0.044**	0.136
ETH152	10	0.739	0.796	0.771	0.071*	0.078**	0.057*	0.070	10	0.299	0.389	0.377	0.233**	0.238	0.021**	-0.002	10	0.601	0.772	0.742	0.222**	0.236**	0.187**	0.267
INRA5	11	0.548	0.719	0.674	0.238**	0.250**	0.102**	0.173	11	0.732	0.836	0.813	0.125**	0.142**	0.054**	0.073	11	0.601	0.774	0.742	0.225**	0.233**	0.108**	0.137
HEL1	10	0.738	0.759	0.723	0.028	0.029	0.012*	0.009	10	0.675	0.778	0.747	0.133**	0.139**	0.022	0.082	10	0.718	0.819	0.795	0.124**	0.132**	0.086**	0.045
CSSM66	15	0.794	0.877	0.864	0.094**	0.098**	0.032**	0.028	14	0.798	0.826	0.804	0.034	0.041*	0.021**	0.048	15	0.795	0.884	0.873	0.101**	0.106**	0.055**	0.090
CSSM33	15	0.686	0.822	0.798	0.166**	0.177**	0.089**	0.057	15	0.754	0.875	0.862	0.139**	0.151**	0.043**	0.006	15	0.707	0.864	0.849	0.181**	0.190**	0.097**	0.251
CSSM9	20	0.782	0.858	0.844	0.088**	0.096**	0.059*	0.018	20	0.774	0.874	0.862	0.114**	0.126**	0.042**	0.131	22	0.780	0.900	0.892	0.134**	0.142**	0.092**	0.289
BM2113	11	0.793	0.855	0.841	0.072**	0.080**	0.054**	0.068	10	0.734	0.841	0.819	0.128**	0.140*	0.044	0.022	11	0.774	0.865	0.852	0.105**	0.111**	0.063**	0.120
ETH10	9	0.695	0.768	0.734	0.094**	0.105**	0.080**	0.123	6	0.607	0.697	0.638	0.129**	0.196	0.230	0.054	9	0.667	0.83	0.808	0.197**	0.214**	0.208**	0.547
SPS115	9	0.550	0.609	0.580	0.096**	0.104**	0.059*	0.107	7	0.638	0.700	0.653	0.089	0.112	0.077	0.027	9	0.578	0.663	0.639	0.128**	0.136**	0.096**	0.102
TGLA122	23	0.817	0.927	0.921	0.119**	0.123**	0.033**	0.032	19	0.815	0.886	0.875	0.080**	0.085*	0.016	-0.002	23	0.816	0.925	0.920	0.118**	0.121**	0.038**	0.122
ETH225	12	0.779	0.855	0.837	0.089**	0.096*	0.051*	0.015	12	0.529	0.664	0.643	0.203**	0.208**	0.020	0.015	12	0.699	0.863	0.848	0.190**	0.200**	0.124**	0.346
TGLA227	14	0.755	0.870	0.857	0.133**	0.145**	0.090**	0.187	13	0.384	0.400	0.385	0.042	0.045	0.009	0.044	14	0.635	0.794	0.778	0.201**	0.215**	0.169**	0.370
TGLA53	20	0.724	0.870	0.860	0.168**	0.175**	0.053*	0.044	21	0.646	0.787	0.775	0.180**	0.188**	0.027	0.003	21	0.700	0.850	0.840	0.177**	0.181**	0.048**	0.034
INRA23	13	0.739	0.785	0.761	0.059*	0.068**	0.066**	0.027	12	0.738	0.781	0.762	0.056	0.064	0.025	-0.000	13	0.738	0.794	0.776	0.071**	0.077**	0.063**	0.018
ETH3	11	0.705	0.787	0.765	0.105**	0.114**	0.073**	0.058	9	0.602	0.593	0.536	-0.015	0.002	0.051	0.045	11	0.672	0.770	0.739	0.127**	0.138**	0.122**	0.085
BM1824	12	0.696	0.790	0.759	0.119**	0.125**	0.040**	0.047	12	0.693	0.710	0.664	0.024	0.031	0.021	0.015	12	0.695	0.781	0.749	0.109**	0.114**	0.052**	0.044
Mean	13	0.6955	0.793	0.769	0.123**	0.131**	0.061**	0.0606	12,23	0.6458	0.748	0.723	0.137**	0.149**	0.040**	0.0549	13.18	0.680	0.816	0.796	0.167**	0.176**	0.098**	0.1861

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