Evidence for multiple alleles effecting muscling and fatness at the Ovine GDF8 locus

BMC Genomic Data

Table 6 Within and Across Family Estimation of Microsatellite Haplotype Effects

Hap ID ¹	Sire	Trait ²	Across Family ³		Within Family ⁴
			Effect	Pr (> LR-value)	Effect	Pr (> LR-value)
1	S1	grknf	-0.355	0.018	-0.382	0.084
1	S7		-0.363	0.017	-0.595	0.015
2	S1	emd1	0.280	0.028	0.280	0.202
2	S5		0.276	0.031	-0.010	1.000
2	S6		0.284	0.025	0.461	0.038
2	S8		0.283	0.028	0.244	0.438
3	S2	cfatc	0.339	0.039	0.574	0.008
3	S7		0.327	0.049	0.189	0.436
3	S2	grknf	0.555	0.001	0.564	0.010
3	S7		0.560	0.001	0.595	0.015
4	S2	emac	0.286	0.052	0.133	0.539
4	S11		0.292	0.052	-0.028	1.000
4	S14		0.302	0.041	0.620	0.005
4	S2	imf	-0.550	0.000	-0.414	0.059
4	S11		-0.564	0.000	-0.366	0.198
4	S14		-0.562	0.000	-0.778	0.001
4	S2	cfatc	-0.439	0.003	-0.574	0.008
4	S11		-0.446	0.003	-0.471	0.090
4	S14		-0.426	0.004	-0.171	0.437
4	S2	grknf	-0.427	0.004	-0.564	0.010
4	S11		-0.437	0.004	-0.606	0.026
4	S14		-0.417	0.005	-0.233	0.283
6	S3	emd1	-0.534	0.002	-0.711	0.001
6	S8		-0.530	0.003	-0.244	0.438
13	S10	emac	-0.351	0.029	-0.141	0.644
18	S14		-0.360	0.023	-0.620	0.005

¹ The genotypic composition of each haplotype is given in Table 1.
² Haplotype effects are given where significant likelihood ratio (LR < 3.84) was observed for any of five traits in either the across- or within-family analysis.
³ Across-family haplotype effects were calculated using linkage and linkage disequilibrium (LDL).
⁴ Within-family haplotype effects were calculated using linkage alone.

ISSN: 2730-6844