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Table 3 Human tissue-specific TE-exons

From: SERpredict: Detection of tissue- or tumor-specific isoforms generated through exonization of transposable elements

Gene

TE

Chr.

Tissue

TS score

Zinc finger protein 195

L1

11

nerve

92.41

Zinc finger protein 33A

L1

10

trachea

96.81

Ribonuclease P protein subunit p38

Alu

10

bone

92.30

AP-3 complex subunit mu-1

Alu

10

eye

99.21

Zinc finger protein 195.

Alu

11

nerve

92.41

4F2 cell-surface antigen heavy chain

Alu

11

bone

96.69

   

uterus

96.34

Suppressor of G2 allele of SKP1 homolog

Alu

13

pancreas

94.39

   

muscle

96.65

Centrosomal protein of 27 kDa

Alu

15

uterus

93.29

Fumarylacetoacetate hydrolase domain-containing protein 1

Alu

16

placenta

94.01

T-cell activation NFKB-like protein

Alu

19

ovary

93.65

Zinc finger protein 320

Alu

19

embryo

96.68

Zinc finger MYM-type protein 1

Alu

1

brain

97.84

Protein MANBAL

Alu

20

stomach

93.75

Serine/threonine-protein kinase 6

Alu

20

mouth_oral

94.16

CDNA FLJ20699 fis. clone KAIA2372.

Alu

22

muscle

93.75

   

brain

98.69

DNA directed RNA polymerase II

Alu

7

colon

93.45

   

ovary

93.45

   

thymus

98.29

Putative ribosomal RNA methyltransferase 2

Alu

7

breast

93.74

GPI ethanolamine phosphate transf. 3

Alu

9

eye

91.82

Soluble calcium-activated nucl. 1

L2

17

placenta

98.14

Intraflagellar transport 20 homolog

L2

17

colon

98.92

   

muscle

93.73

CDNA FLJ32655 fis

CR1

17

testis

99.99

Retinol dehydrogenase 13

MIR

19

testis

93.74

   

uterus

92.69

Tripartite motif-containing protein 14.

MIR

9

thymus

93.39

Salivary alpha-amylase precursor

ERVK

1

muscle

97.67

Thiamin pyrophosphokinase 1

ERV1

7

testis

93.75

Hypothetical protein Q8WZ27

ERV1

4

thyroid

93.73

Trafficking protein particle complex protein 2

MER1

X

testis

92.55

mTERF domain-containing protein 2.

MER2

2

brain

99.09

  1. Potentially tissue-specific TE-exons in the human transcriptome. From left to right: the gene name in which the exonization occurred, the transposed elements family name, the chromosome number, the name of the tissue to which the exon is specific and the TS score.