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Table 1 Characterisation of 130 bovine microsatellites tested on a panel of 11 wild gaurs

From: Genomic conservation of cattle microsatellite loci in wild gaur (Bos gaurus) and current genetic status of this species in Vietnam

Marker

Chromosome no. in cattle

Allele size range (bp)

Number of alleles

H E

H o

PIC

AGLA17

1

217–221

3

0.385

0.273

0.326

AGLA293

5

231–231

1

-

-

-

BL1029

14

151–155

2

0.091

0.091

0.083

BL1038

6

109–109

1

-

-

-

BL1040

26

96–108

3

0.255

0.273

0.228

BL1043

7

100–104

3

0.177

0.182

0.163

BL1071

13

179–195

4

0.680

0.636

0.594

BL1095

15

164–174

3

0.385

0.455

0.326

BL25

28

171–185

2

0.247

0.273

0.208

BM1314*

26

-

-

-

-

-

BM1818

23

264–264

1

-

-

-

BM1824

1

187–187

1

-

-

-

BM1862

17

201–213

3

0.567

0.727

0.463

BM188

26

108–108

1

-

-

-

BM203

27

211–213

2

0.312

0.182

0.253

BM2113

2

129–129

1

-

-

-

BM2304*

8

-

-

-

-

-

BM3020

3

159–159

1

-

-

-

BM4005

25

107–107

1

-

-

-

BM4602

29

128–130

2

0.519

-

0.373

BM4621

6

131–131

1

-

-

-

BM6017*

X

-

-

-

-

-

BM6425

14

167–195

6

0.823

0.818

0.751

BM6438

1

256–256

1

-

-

-

BM6465

3

122–122

1

-

-

-

BM8139

1

110–116

3

0.394

0.273

0.344

BM8151

18

157–161

3

0.589

0.545

0.476

BM861

Y

135–135

1

-

-

-

BM875

10

107–119

2

0.519

0.364

0.373

BMC1410

4

215–219

3

0.593

0.636

0.504

BMC2228*

29

-

-

-

-

-

BMC6020

28

177–177

1

-

-

-

BMC6021

X

141–141

1

-

-

-

BMS1074

4

157–157

1

-

-

-

BMS1120

20

123–137

6

0.835

0.909

0.767

BMS1128

20

80–82

2

0.091

0.091

0.083

BMS1244

29

103–105

2

0.173

0.182

0.152

BMS1247

7

111–121

3

0.537

0.364

0.444

BMS1282

20

151–165

4

0.333

0.273

0.302

BMS1322

18

117–121

3

0.498

0.091

0.419

BMS1353

25

95–103

2

0.368

0.091

0.290

BMS1355

18

154–160

4

0.697

0.818

0.607

BMS1616

X

65–65

1

-

-

-

BMS1714

28

120–122

2

0.416

0.545

0.318

BMS1825

17

191–191

1

-

-

-

BMS1857

29

155–165

4

0.675

0.545

0.575

BMS1926

24

132–136

3

0.394

0.091

0.344

BMS1928

1

141–161

4

0.576

0.636

0.511

BMS1948

29

93–93

1

-

-

-

BMS1979

7

95–99

3

0.498

0.636

0.419

BMS2213

18

112–120

2

0.524

0.455

0.375

BMS2252

12

158–164

4

0.697

0.455

0.604

BMS2270

24

57–63

2

0.485

0.545

0.356

BMS2526

24

135–159

4

0.762

0.636

0.678

BMS2639

18

160–160

1

-

-

-

BMS3024

24

142–142

1

-

-

-

BMS332*

26

-

-

-

-

-

BMS4015

1

144–152

4

0.688

0.636

0.606

BMS424B

11

256–258

2

0.091

0.091

0.083

BMS522

7

134–134

1

-

-

-

BMS574

1

131–131

1

-

-

-

BMS631

X

146–146

1

-

-

-

BMS650

19

141–141

1

-

-

-

BMS672

22

143–143

1

-

-

-

BMS711

1

102–102

1

-

-

-

BMS745

19

109–109

1

-

-

-

BMS779

4

191–195

2

0.312

0.364

0.253

BMS911*

X

-

-

-

-

-

BR4206

18

110–110

1

-

-

-

BR4406

18

114–114

1

-

-

-

CSRM60

10

86–114

2

0.368

0.273

0.290

CSSM023*

24

-

-

-

-

-

CSSM66

14

182–202

3

0.593

0.727

0.504

ETH10

5

207–213

3

0.450

0.455

0.385

ETH11

16

204–212

4

0.688

0.636

0.593

ETH121

2

182–210

3

0.498

0.455

0.419

ETH123*

X

-

-

-

-

-

ETH152

5

198–198

1

-

-

-

ETH185

17

219–219

1

-

-

-

ETH225

9

145–159

3

0.636

0.636

0.524

ETH3

19

127–131

3

0.654

0.545

0.553

HAUT14*

18

-

-

-

-

-

HAUT24

22

120–120

1

-

-

-

HAUT27

26

145–145

1

-

-

-

HEL1

15

108–120

3

0.628

0.636

0.519

HEL11*

26

-

-

-

-

-

HEL13

11

193–203

3

0.325

0.364

0.282

HEL5*

21

-

-

-

-

-

HEL9

8

146–152

4

0.610

0.545

0.533

IDVGA59

26

250–254

3

0.437

0.364

0.360

IDVGA90

7

194–194

1

-

-

-

ILSTS005*

10

-

-

-

-

-

ILSTS006

7

275–281

2

0.173

 

0.152

ILSTS015

29

265–265

1

-

-

-

ILSTS017

X

117–117

1

-

-

-

ILSTS021

18

116–116

1

-

-

-

ILSTS102

25

146–146

1

-

-

-

INRA005

12

135–141

4

0.697

0.818

0.600

INRA023

3

207–217

4

0.710

0.636

0.623

INRA032

11

169–181

5

0.753

0.727

0.674

INRA035

16

108–108

1

-

-

-

INRA037

10

126–132

4

0.727

0.636

0.637

INRA063

18

173–187

5

0.758

0.636

0.675

INRA081

26

145–153

3

0.567

0.545

0.463

INRA117

1

91–97

2

0.173

0.182

0.152

INRA121

18

114–136

4

0.710

0.545

0.615

INRA124

Y

132–132

1

-

-

-

INRA126

Y

182–182

1

-

-

-

INRA133

6

221–231

3

0.437

0.364

0.360

INRA183

27

117–117

1

-

-

-

INRA189*

Y

-

-

-

-

-

MB054

18

123–123

1

-

-

-

MB085

15

198–202

3

0.593

0.455

0.505

MHCII

23

213–225

4

0.723

0.636

0.633

MM12E6

9

108–108

1

-

-

-

RM026

26

81–81

1

-

-

-

RM372

8

128–134

3

0.450

0.364

0.385

SPS115

15

253–253

1

-

-

-

TEXAN10

18

145–151

4

0.706

0.818

0.613

TGLA122

21

166–168

2

0.455

0.455

0.340

TGLA126

20

121–125

3

0.498

0.091

0.419

TGLA179

27

89–103

3

0.697

0.636

0.591

TGLA227

18

72–84

3

0.584

0.455

0.490

TGLA23

13

100–104

3

0.567

0.818

0.436

TGLA49

1

115–117

2

0.247

0.273

0.208

TGLA53

16

151–175

5

0.701

0.727

0.606

TGLA73

9

116–126

4

0.749

0.727

0.663

UWCA25

13

102–102

1

-

-

-

XBM11

X

182–182

1

-

-

-

XBM7

X

174–174

1

-

-

-

  1. * = markers not amplified
  2. H E = expected heterozygosity
  3. H o = observed heterozygosity
  4. PIC = polymorphism Information Content
  5. The 28 microsatellites with PIC value > 0.5 are bold-faced. Information concerning the bovine microsatellite markers used can be acquired from internet sites [32-34].
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BMC Genomic Data

ISSN: 2730-6844

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