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Table 1 SNPs used for haplotype construction in Jamaicans.

From: Classical sickle beta-globin haplotypes exhibit a high degree of long-range haplotype similarity in African and Afro-Caribbean populations

rs numbera Chr loca Dist from HbS (bp)b Allelesc MAFd
rs872165 5381108 -176300 C/A 0.29
rs1498468 5367607 -162799 T/C 0.33
rs2647598 5332852 -128044 T/C 0.41
rs7929631 5324552 -119744 T/G 0.33
rs7938837 5319683 -114875 C/G 0.28
rs3898917 5284937 -80129 G/T 0.27
rs3888708 5274956 -70148 C/A 0.89
rs2156918 5253468 -48660 C/G 0.23
rs2855122 5233812 -29004 A/G 0.42
Xmn1 5232745 -27937 -/+ 0.10
Hind3 5231293 -26485 -/+ 0.44
Hind3 5226375 -21567 -/+ 0.12
rs916111 5225919 -21111 A/T 0.17
rs2071348 5220722 -15914 A/C 0.10
Hinc2 5217034 -12226 -/+ 0.15
rs16911905 5205866 -1058 G/C 0.29
rs11036364 5205580 -772 A/G 0.24
HbS (rs334) 5204808 0 A/T 0.06
rs4910726 5156896 47912 A/C 0.17
rs4910722 5153293 51515 A/G 0.20
rs4910715 5132596 72212 G/T 0.48
rs2472523 5123701 81107 G/A 0.06
rs2472527 5118600 86208 T/C 0.05
rs7114854 5100498 104310 A/C 0.20
rs17497 5014184 190624 G/C 0.44
rs2499953 4967481 237327 A/G 0.26
  1. a– rs numbers and location on chromosome 6 (Chr loc) are given with reference to HapMap release #20
  2. b– Negative distances (Dist) from the HbS allele are upstream (5') of the allele, positive distances are downstream (3')
  3. c– SNP alleles given as major/minor.
  4. d– Minor allele frequency.