Figure 5

LD decay plots for the data generated in Group 2, based on the MLE (panel a) and the MAP approximation (panel b: α = 1, panel c: α = 0.25, and panel d: α = 4) of D'. The line type represents two thresholds on the MAF: 0.0 (dashed line), and 0.05 (continuous line). The line color represents five sample sizes: n = 60 (black); n = 120 (red); n = 240 (green); n = 480 (dark blue); n = 1000 (pale blue).