Low major histocompatibility complex class II DQA diversity in the Giant Panda (Ailuropoda melanoleuca)

BMC Genomic Data

Table 3 Synonymous and non-synonymous substitutions in the 6 DQA alleles of the giant panda. Distances were calculated separately for ABS and non-ABS and the distribution of gene frequency was taken into account. Standard errors were computed using 1000 bootstrap replicates. N is the number of codons in each category and P is the probability that d_Nand d_Sare different.

Population	Positions	N	d _N	d _S	d_N/d_S	P
Ya'an-Wolong	ABS	21	0.022 ± 0.013	0.000 ± 0.000	∞	0.047
	Non-ABS	70	0.014 ± 0.007	0.011 ± 0.011	1.273	0.441
	All	91	0.016 ± 0.006	0.010 ± 0.010	1.600	0.259
Chengdu	ABS	21	0.055 ± 0.030	0.000 ± 0.000	∞	0.033
	Non-ABS	70	0.018 ± 0.008	0.009 ± 0.009	2.000	0.169
	All	91	0.027 ± 0.010	0.007 ± 0.007	3.857	0.037
Louguantai	ABS	21	0.044 ± 0.021	0.000 ± 0.000	∞	0.022
	Non-ABS	70	0.017 ± 0.007	0.011 ± 0.011	1.545	0.292
	All	91	0.024 ± 0.008	0.009 ± 0.009	2.667	0.063
All	ABS	21	0.047 ± 0.023	0.000 ± 0.000	∞	0.020
	Non-ABS	70	0.016 ± 0.007	0.010 ± 0.010	1.600	0.214
	All	91	0.024 ± 0.008	0.008 ± 0.008	3.000	0.046

ISSN: 2730-6844