Position | MAF (%) | SNPs N. | Â | Â | PCR (bp) | Â | T.A. | Primer set (from Table 1) | SSO probe |
---|---|---|---|---|---|---|---|---|---|
-84 | 9.9 | 1 | rs29228 | 5' | 613 | A/G | 57°C | 1 | cggacaaaaAcagaaatgt |
290 | 5.6 | 2 | rs29234 | 5' | 525 | A/C | 58°C | 2 | agctgagccAagaggtgag |
1179 | 6.0 | 3 | rs3130250 | Ex1 | 762 | G/A | 60°C | 3 | agcttatcGagaccctct |
1715 | 23.0 | 4 | rs2262263 | Intr1 | 509 | A/G | 60°C | 4 | cccgcctcAgcttcccaa |
2498 | 7.3 | 5 | rs2252711 | Intr1 | 508 | T/C | 58°C | 5 | gagagacagTtaaagtaga |
2553 | 4.2 | 6 | rs9257932 | Intr1 | 408 | T/C | 57°C | 6 | ggcagcaatTtggccaagt |
2582 | 1.6 | 7 | SNP01(novel) | Intr1 | 408 | G/A | 57°C | 6 | aggcccataGgaggattca |
2925 | 1.7 | 8 | SNP02(novel) | Intr1 | 706 | A/G | 59°C | 7 | attagctggAtgcggcggt |
3129 | 22.8 | 9 | rs2252734 | Intr1 | 568 | C/G | 57°C | 8 | gaagaaCaattgcaatc |
4210 | 12.6 | 10 | SNP03(novel) | Intr2 | 642 | G/A | 58°C | 9 | gcccagcgccgtGgctc |
4217 | 10.5 | 11 | rs3095294 | Intr2 | 642 | A/G | 58°C | 9 | ctcacAcctgtaatccca |
4413 | 14.5 | 12 | rs2535262 | Intr2 | 507 | G/A | 57°C | 10 | gtgaacccGgaagcggag |
4482 | 17.7 | 13 | rs2535261 | Intr2 | 507 | G/A | 57°C | 10 | cagcgagactccGtctca |
4521 | 9.8 | 14 | rs9257933 | Intr2 | 507 | G/A | 57°C | 10 | gtatttgtgagcgcGcac |
4617 | 7.0 | 15 | rs3135050 | Intr2 | 580 | T/C | 63°C | 11 | gagatgtcacTttttggc |
4799 | 35.9 | 16 | rs3095292 | Intr2 | 580 | G/A | 63°C | 11 | ccgagtagctgGgattac |
5062 | 20.9 | 17 | rs2535260 | Intr2 | 584 | C/G | 62°C | 12 | aggtgaagcCgatggagg |
5523 | 10.6 | 18 | rs3130251 | Intr2 | 518 | C/T | 60°C | 13 | cacctataaCcccaaaac |
7769 | 1.1 | 19 | rs2857783 | Intr2 | 569 | T/C | 59°C | 14 | acttgaaagTaaaggtag |
9199 | 47.4 | 20 | rs2535253 | Intr2 | 591 | A/C | 59°C | 15 | attacaggaAtgtgccacc |
9875 | 16.3 | 21 | SNP04(novel) | Intr2 | 404 | A/G | 56°C | 16 | ccttgagggActtcagat |
10230 | 10.3 | 22 | rs2857766 | Ex3 | 493 | G/C | 58°C | 17 | tcctgcagatcactGttg |
10239 | 1.1 | 23 | rs3130253 | Ex3 | 493 | G/A | 58°C | 17 | ttggcctcGtcttcctct |
10495 | 4.4 | 24 | rs2857767 | Intr3 | 573 | C/G | 62°C | 18 | taactatgCcatatagtaa |
10738 | 1.3 | 25 | rs2857768 | Intr3 | 573 | T/C | 62°C | 18 | ttgtttcctcTttctccat |
10844 | 6.7 | 26 | rs2535249 | Intr3 | 573 | A/G | 62°C | 18 | tctccccaAtgccagagca |
11154 | 4.5 | 27 | rs17184486 | Intr3 | 493 | A/G | 56°C | 19 | gattctccAagcttcagtt |
11195 | 5.3 | 28 | rs2857771 | Intr3 | 493 | C/T | 56°C | 19 | aacatcctCcctcctaaat |
11197 | 5.3 | 29 | rs2535247 | Intr3 | 493 | C/G | 56°C | 19 | aacatcctccCtcctaaat |
11544 | 12.9 | 30 | rs2071652 | Intr3 | 740 | C/T | 62°C | 20 | ccaggctgCagagaaatag |
11735 | 11.6 | 31 | rs17184521 | Intr4 | 740 | G/A | 62°C | 20 | aaatggtcccGttcttgga |
12155 | 36.3 | 32 | rs2071653 | Intr5 | 583 | C/T | 57°C | 21 | tacaaaaaCgttatcttat |
12556 | 9.2 | 33 | SNP05(novel) | Intr5 | 614 | C/A | 61°C | 22 | cagatggtaCcttctctga |
12636 | 17.6 | 34 | rs2535246 | Intr5 | 614 | T/G | 61°C | 22 | cacagagTtctatcgtacg |
13049 | 22.2 | 35 | rs2535245 | Intr5 | 545 | T/C | 58°C | 23 | ctcagcctccTgagtagct |
13937 | 35.8 | 36 | rs3095291 | Intr5 | 713 | G/C | 58°C | 24 | cacgcccaGctaattttta |
15643 | 13.9 | 37 | SNP06(novel) | Ex8 | 527 | G/A | 59°C | 25 | tgtgaaggGaaggaagagg |
16003 | 11.8 | 38 | rs9257936 | Ex8 | 593 | C/T | 59°C | 26 | gataCgagttttggccggg |
16248 | 6.2 | 39 | rs3135049 | Ex8 | 593 | C/T | 59°C | 26 | agctgagatcgCgccactg |
16457 | 13.8 | 40 | SNP07(novel) | 3' | 569 | A/G | 61°C | 27 | attaccccagAggtcagtc |