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Table 2

From: Variation of the Myelin Oligodendrocyte Glycoprotein gene is not primarily associated with multiple sclerosis in the Sardinian population

Position

MAF (%)

SNPs N.

  

PCR (bp)

 

T.A.

Primer set (from Table 1)

SSO probe

-84

9.9

1

rs29228

5'

613

A/G

57°C

1

cggacaaaaAcagaaatgt

290

5.6

2

rs29234

5'

525

A/C

58°C

2

agctgagccAagaggtgag

1179

6.0

3

rs3130250

Ex1

762

G/A

60°C

3

agcttatcGagaccctct

1715

23.0

4

rs2262263

Intr1

509

A/G

60°C

4

cccgcctcAgcttcccaa

2498

7.3

5

rs2252711

Intr1

508

T/C

58°C

5

gagagacagTtaaagtaga

2553

4.2

6

rs9257932

Intr1

408

T/C

57°C

6

ggcagcaatTtggccaagt

2582

1.6

7

SNP01(novel)

Intr1

408

G/A

57°C

6

aggcccataGgaggattca

2925

1.7

8

SNP02(novel)

Intr1

706

A/G

59°C

7

attagctggAtgcggcggt

3129

22.8

9

rs2252734

Intr1

568

C/G

57°C

8

gaagaaCaattgcaatc

4210

12.6

10

SNP03(novel)

Intr2

642

G/A

58°C

9

gcccagcgccgtGgctc

4217

10.5

11

rs3095294

Intr2

642

A/G

58°C

9

ctcacAcctgtaatccca

4413

14.5

12

rs2535262

Intr2

507

G/A

57°C

10

gtgaacccGgaagcggag

4482

17.7

13

rs2535261

Intr2

507

G/A

57°C

10

cagcgagactccGtctca

4521

9.8

14

rs9257933

Intr2

507

G/A

57°C

10

gtatttgtgagcgcGcac

4617

7.0

15

rs3135050

Intr2

580

T/C

63°C

11

gagatgtcacTttttggc

4799

35.9

16

rs3095292

Intr2

580

G/A

63°C

11

ccgagtagctgGgattac

5062

20.9

17

rs2535260

Intr2

584

C/G

62°C

12

aggtgaagcCgatggagg

5523

10.6

18

rs3130251

Intr2

518

C/T

60°C

13

cacctataaCcccaaaac

7769

1.1

19

rs2857783

Intr2

569

T/C

59°C

14

acttgaaagTaaaggtag

9199

47.4

20

rs2535253

Intr2

591

A/C

59°C

15

attacaggaAtgtgccacc

9875

16.3

21

SNP04(novel)

Intr2

404

A/G

56°C

16

ccttgagggActtcagat

10230

10.3

22

rs2857766

Ex3

493

G/C

58°C

17

tcctgcagatcactGttg

10239

1.1

23

rs3130253

Ex3

493

G/A

58°C

17

ttggcctcGtcttcctct

10495

4.4

24

rs2857767

Intr3

573

C/G

62°C

18

taactatgCcatatagtaa

10738

1.3

25

rs2857768

Intr3

573

T/C

62°C

18

ttgtttcctcTttctccat

10844

6.7

26

rs2535249

Intr3

573

A/G

62°C

18

tctccccaAtgccagagca

11154

4.5

27

rs17184486

Intr3

493

A/G

56°C

19

gattctccAagcttcagtt

11195

5.3

28

rs2857771

Intr3

493

C/T

56°C

19

aacatcctCcctcctaaat

11197

5.3

29

rs2535247

Intr3

493

C/G

56°C

19

aacatcctccCtcctaaat

11544

12.9

30

rs2071652

Intr3

740

C/T

62°C

20

ccaggctgCagagaaatag

11735

11.6

31

rs17184521

Intr4

740

G/A

62°C

20

aaatggtcccGttcttgga

12155

36.3

32

rs2071653

Intr5

583

C/T

57°C

21

tacaaaaaCgttatcttat

12556

9.2

33

SNP05(novel)

Intr5

614

C/A

61°C

22

cagatggtaCcttctctga

12636

17.6

34

rs2535246

Intr5

614

T/G

61°C

22

cacagagTtctatcgtacg

13049

22.2

35

rs2535245

Intr5

545

T/C

58°C

23

ctcagcctccTgagtagct

13937

35.8

36

rs3095291

Intr5

713

G/C

58°C

24

cacgcccaGctaattttta

15643

13.9

37

SNP06(novel)

Ex8

527

G/A

59°C

25

tgtgaaggGaaggaagagg

16003

11.8

38

rs9257936

Ex8

593

C/T

59°C

26

gataCgagttttggccggg

16248

6.2

39

rs3135049

Ex8

593

C/T

59°C

26

agctgagatcgCgccactg

16457

13.8

40

SNP07(novel)

3'

569

A/G

61°C

27

attaccccagAggtcagtc