From: Sequencing and association analysis of the type 1 diabetes – linked region on chromosome 10p12-q11
Gene Polymorphism | Allele 1/2c | Affected offspring | Allele 1, Transmitted (%) | Allele 1, Non-transmitted (%) | P-value TDT | Allele 1, frequency d |
---|---|---|---|---|---|---|
PAPD1 | ||||||
Rs639299a | G/A | 2029 | 777 (48.2) | 834 (51.8) | 0.16 | 0.69 |
rs1963187a | A/T | 2383 | 272 (56.1) | 213 (43.9) | 0.0074 | 0.95 |
rs2480285a | G/A | 2642 | 785 (46.3) | 909 (53.7) | 0.0026 | 0.21 |
D10S1426a | 1401 | 0.21 | ||||
*158 | 502 (52.7) | 450 (47.3) | 0.092 | 0.27 | ||
*162 | 502 (48.4) | 535 (51.6) | 0.31 | 0.33 | ||
*166 | 420 (52.3) | 383 (47.7) | 0.19 | 0.23 | ||
D10S193a | 1932 | 0.037 | ||||
*220 | 587 (46.6) | 673 (53.4) | 0.015 | 0.28 | ||
*224 | 781 (52.2) | 716 (47.8) | 0.093 | 0.35 | ||
*226 | 363 (55.1) | 296 (44.9) | 0.0091 | 0.11 | ||
*228 | 185 (47.8) | 202 (52.2) | 0.39 | 0.07 | ||
rs540994 b | A/C | 2096 | 941 (51.4) | 889 (48.6) | 0.22 | 0.45 |
ss48399034b | A/T | 2124 | 178 (58.4) | 127 (41.6) | 0.0035 | 0.96 |
rs1047991b | G/A | 2382 | 849 (48.1) | 916 (51.9) | 0.11 | 0.73 |
rs11818836b | A/G | 2087 | 958 (52.2) | 876 (47.8) | 0.056 | 0.45 |
ss48399025b | A/C | 2284 | 388 (54.0) | 330 (46.0) | 0.030 | 0.90 |
ss48399036b | A/G | 3207 | 137 (55.0) | 112 (45.0) | 0.11 | 0.02 |
ss48399044b | T/A | 2061 | 461 (46.6) | 529 (53.4) | 0.031 | 0.83 |
NRP1 | ||||||
rs13324a | A/G | 2134 | 826 (50.6) | 806 (49.4) | 0.62 | 0.30 |
rs1048804a | A/G | 2047 | 661 (47.7) | 725 (52.3) | 0.086 | 0.75 |
rs1010826a | A/G | 2125 | 737 (51.9) | 683 (48.1) | 0.15 | 0.24 |
MYO3A | ||||||
rs1339816 a | A/G | 2107 | 820 (47.7) | 898 (52.3) | 0.060 | 0.35 |
rs2096176 a | A/G | 2116 | 893 (47.6) | 984 (52.4) | 0.036 | 0.42 |
HNRPF | ||||||
rs1416226a | A/G | 2090 | 728 (53.5) | 632 (46.5) | 0.0092 | 0.23 |
SVIL | ||||||
rs2274494a | A/G | 2152 | 894 (47.5) | 987 (52.5) | 0.032 | 0.37 |
rs11600a | A/G | 2147 | 432 (47.5) | 477 (52.5) | 0.14 | 0.13 |
Intergenic | ||||||
rs787025 a | A/C | 2038 | 237 (45.6) | 283 (54.4) | 0.044 | 0.06 |
BMS1L | ||||||
rs787795a | A/G | 2102 | 537 (53.4) | 469 (46.6) | 0.032 | 0.86 |