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Table 4 Performances of haplotyping programs on simulated data based on a coalescence model with mutation rate of 4 (= 4Neθ).

From: Empirical vs Bayesian approach for estimating haplotypes from genotypes of unrelated individuals

Average #SNP Sample size Similarity Index Prediction Rate Average Running Time (in seconds)
   Empirical Bayesian Empirical Bayesian Empirical Bayesian
   PL-EM Hplus PHASE HAPLO+ PL-EM HPlus PHASE HAPLO+ PL-EM HPlus PHASE HAPLO+
25 100 0.943 0.947 0.982 0.976 0.941 0.945 0.981 0.976 1.39 0.18 122.89 2.52
25 150 0.955 0.960 0.988 0.986 0.952 0.957 0.988 0.986 2.56 0.23 185.86 3.09
26 200 0.967 0.971 0.991 0.988 0.964 0.968 0.988 0.988 5.51 0.29 283.28 4.36
29 250 0.974 0.977 0.992 0.986 0.973 0.976 0.993 0.980 12.37 0.36 429.03 5.75
  1. +: HAPLO is short for HAPLOTYPER