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Table 2 Performances of haplotyping programs on analyzing 500 randomly selected haplotype blocks of the 30 African mothers' genotypes on X-chromosome from the HapMap data.

From: Empirical vs Bayesian approach for estimating haplotypes from genotypes of unrelated individuals

Performances Empirical Method Bayesian Method
  PL-EM HPlus PHASE HAPLOTYPER*
Similarity Index     
Mean 0.988 0.988 0.987 0.998
Median 1.0 1.0 1.0 1.0
Standard deviation 0.025 0.024 0.027 0.025
Range (0.833, 1.0) (0.833, 1.0) (0.689,1.0) (0.833,1.0)
Prediction Rate     
Mean 0.987 0.987 0.987 0.987
Median 1.0 1.0 1.0 1.0
Standard deviation 0.027 0.027 0.030 0.027
Range (0.800, 1.0) (0.800, 1.0) (0.683, 1.0) (0.800, 1.0)
Running Time (in second) 15 7 1174 37
  1. *: HAPLOTYPER failed to resolve 2 of the 500 haplotype blocks.