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Table 1 Performances of haplotyping methods on analyzing 500 randomly selected haplotype blocks of the 30 European mothers' genotypes on X-chromosome from the HapMap data.

From: Empirical vs Bayesian approach for estimating haplotypes from genotypes of unrelated individuals

Performances Empirical Method Bayesian Method
  PL-EM HPlus PHASE HAPLOTYPER*
Similarity Index     
Mean 0.989 0.990 0.986 0.991
Median 1.0 1.0 1.0 1.0
Standard deviation 0.029 0.024 0.040 0.024
Range (0.733, 1.0) (0.833, 1.0) (0.292,1.0) (0.733,1.0)
Prediction Rate     
Mean 0.989 0.990 0.990 0.991
Median 1.0 1.0 1.0 1.0
Standard deviation 0.029 0.025 0.040 0.025
Range (0.733, 1.0) (0.833, 1.0) (0.283, 1.0) (0.733, 1.0)
Running Time (in second) 98 20 9935 422
  1. *: HAPLOTYPER failed to resolve 18 of the 500 haplotype blocks.