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Table 2 Mean (minimum, maximum) effective sample size of estimated additive genetic correlations for investigated QTL scenarios.

From: Bayesian estimation of genetic parameters for multivariate threshold and continuous phenotypes and molecular genetic data in simulated horse populations using Gibbs sampling

  Dataset
Parameter A1 A2 B1 B2 C1 C2
rg12 435.7 (306.8, 639.8) 475.2 (198.2, 794.3) 367.1 (158.7, 612.5) 444.1 (238.1, 576.8) 281.3 (210.9, 416.0) 314.6 (240.9, 451.0)
  464.0 (191.0, 701.5) 485.1 (313.2, 710.0) 287.8 (148.9, 511.4) 388.9 (209.6, 566.3) 284.6 (202.4, 400.7) 337.0 (172.1, 445.7)
  347.2 (222.0, 482.4) 448.2 (326.1, 669.8) 316.2 (196.6, 471.0) 373.2 (242.0, 494.0) 309.1 (124.4, 591.1) 346.4 (257.6, 474.2)
rg13 383.8 (221.8, 497.4) 500.7 (217.6, 658.0) 236.4 (139.3, 339.3) 436.7 (217.5, 603.2) 207.9 (100.9, 371.0) 430.9 (201.5, 650.8)
  384.6 (75.2, 662.9) 498.5 (242.5, 758.7) 278.4 (107.3, 538.6) 453.6 (219.5, 664.0) 222.9 (102.9, 346.8) 459.5 (238.8, 652.6)
  353.4 (181.9, 523.0) 512.0 (286.6, 814.1) 230.3 (121.0, 435.1) 463.5 (244.3, 693.0) 213.9 (111.5, 442.5) 449.4 (194.5, 723.8)
rg14 257.1 (127.9, 371.0) 293.3 (194.5, 493.1) 175.7 (52.1, 261.0) 282.8 (147.2, 459.2) 198.5 (90.8, 295.2) 281.5 (158.0, 389.1)
  291.2 (191.9, 514.9) 336.8 (161.9, 533.1) 213.5 (151.9, 290.1) 274.9 (174.5, 369.1) 182.8 (128.6, 228.0) 284.2 (111.2, 419.9)
  278.3 (170.7, 470.7) 312.3 (139.6, 526.8) 211.2 (126.2, 260.9) 261.7 (123.5, 405.3) 207.9 (108.3, 301.0) 245.5 (172.3, 334.4)
rg15 1056.4 (722.0, 1399.0) 1301.3 (1063.7, 1489.8) 836.1 (479.0, 1471.4) 1312.6 (1065.5, 1492.6) 841.7 (482.2, 1299.6) 1237.8 (815.4, 1399.2)
  1043.5 (638.6, 1453.7) 1312.0 (1141.2, 1614.4) 810.7 (553.7, 1308.4) 1315.6 (1005.0, 1418.0) 900.0 (658.3, 1460.2) 1325.4 (1061.5, 1547.2)
  1049.5 (614.2, 1469.9) 1313.5 (1069.9, 1614.0) 905.2 (739.5, 1245.4) 1287.0 (1108.5, 1368.9) 852.5 (593.2, 1207.6) 1281.6 (1027.8, 1545.3)
rg23 149.4 (129.6, 187.4) 159.3 (76.5, 197.8) 121.6 (82.2, 162.2) 155.5 (112.9, 208.3) 104.5 (69.2, 125.8) 130.7 (75.4, 179.4)
  168.0 (153.1, 201.9) 157.8 (108.9, 196.8) 117.3 (54.7, 161.9) 157.2 (80.2, 212.2) 128.6 (89.1, 156.0) 152.1 (94.6, 220.7)
  139.2 (87.9, 204.7) 145.9 (90.5, 199.8) 121.6 (71.1, 188.7) 124.7 (81.1, 161.8) 118.8 (81.9, 176.5) 148.6 (106.2, 187.6)
rg24 107.1 (74.4, 142.7) 104.5 (42.2, 155.4) 97.9 (41.4, 139.5) 104.7 (74.9, 143.5) 91.4 (45.3, 112.1) 103.9 (85.9, 129.5)
  97.9 (32.1, 161.2) 124.8 (94.2, 192.8) 87.1 (30.8, 117.9) 126.8 (71.8, 169.2) 87.5 (60.2, 153.1) 112.4 (75.3, 155.1)
  94.6 (53.9, 146.4) 107.4 (60.5, 132.0) 100.0 (63.1, 121.1) 104.2 (45.4, 140.9) 92.7 (65.0, 126.8) 112.9 (91.3, 158.3)
rg25 215.7 (180.3, 292.2) 256.0 (214.7, 331.0) 170.8 (128.5, 230.0) 258.8 (176.2, 342.7) 143.9 (65.1, 185.5) 196.9 (158.0, 223.6)
  206.7 (93.5, 297.3) 259.1 (151.4, 329.2) 190.4 (84.7, 288.8) 230.4 (179.1, 335.9) 155.1 (84.1, 257.9) 219.3 (128.8, 273.7)
  196.0 (105.3, 290.8) 216.2 (157.4, 299.3) 166.0 (131.6, 215.1) 225.9 (161.6, 281.0) 161.5 (92.6, 251.9) 241.7 (196.6, 310.3)
rg34 112.9 (83.9, 189.5) 134.9 (81.7, 180.1) 86.4 (33.3, 140.4) 105.0 (52.5, 162.0) 91.2 (57.2, 132.3) 119.2 (89.8, 148.6)
  123.8 (78.8, 149.8) 133.1 (81.0, 184.9) 90.6 (58.4, 127.4) 117.8 (89.1, 157.2) 92.8 (80.0, 112.5) 115.6 (71.1, 143.3)
  120.7 (63.5, 163.1) 121.4 (60.5, 159.8) 94.4 (53.4, 131.3) 132.5 (80.7, 168.4) 92.3 (45.1, 144.0) 128.8 (52.8, 179.2)
rg35 250.0 (174.0, 351.5) 376.2 (281.8, 491.5) 218.2 (103.7, 317.9) 301.7 (154.3, 445.0) 190.8 (106.4, 285.9) 338.5 (241.1, 418.1)
  286.5 (220.8, 336.0) 356.4 (224.6, 473.6) 208.2 (112.5, 332.5) 316.1 (194.6, 443.7) 179.7 (80.9, 310.7) 342.1 (264.2, 420.0)
  273.9 (184.2, 387.0) 351.8 (271.0, 443.1) 215.6 (149.6, 336.8) 325.8 (152.3, 398.5) 196.6 (98.8, 269.4) 332.8 (266.5, 399.4)
rg45 164.7 (83.0, 236.4) 190.0 (109.6, 272.5) 120.1 (52.0, 180.9) 184.8 (117.0, 247.4) 122.2 (82.3, 167.6) 145.9 (112.3, 182.1)
  159.8 (91.2, 221.1) 181.0 (83.9, 239.5) 115.2 (73.3, 167.4) 155.8 (90.9, 259.2) 135.6 (87.0, 192.4) 164.5 (117.2, 223.2)
  163.6 (123.8, 241.2) 169.6 (131.3, 264.4) 122.5 (92.8, 187.8) 174.2 (67.9, 248.7) 121.0 (70.1, 176.9) 156.8 (104.1, 205.1)
  1. QTL: quantitative trait locus;
  2. rg12 (rg13, rg14, rg15): additive genetic correlation between continuous trait T1 and binary trait T2 (T3, T4, T5);
  3. rg23 (rg24, rg25, rg34, rg35, rg45): additive genetic correlations between binary traits T2 and T3 (T2 and T4, T2 and T5, T3 and T4, T3 and T5, T4 and T5);
  4. QTL scenarios: different scenarios with respect to recombination rate between markers and QTL (r) and polymorphism information content (PIC) of markers with r = 0.00 and PIC = 0.9 in the first line, r = 0.01 and PIC = 0.9 in the second line, and r = 0.00 and PIC = 0.7 in the third line.
  5. For details on datasets A1 to C2 see Table 6.
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BMC Genomic Data

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