DNA repair gene XRCC1 polymorphisms and bladder cancer risk

BMC Genomic Data

Table 5 List of primers and probes for 14 XRCC1 polymorphisms

Polymorphisms	Forward primers	Reverse primers	VIC probes	FAM probes
rs2682586	GTCCCAGATTGAGAGAGAGAGAGAT	CCCGTTCACCTTGAGGACTTG	CTGAAGGCTCTCTCTCT	TGAAGGCTCTTTCTCT
rs2682585	CTCCCCGTAGGGTGAATGTG	CTGGTCCCCAGCTTTTATAGGAA	CAGACCCGCCCCTC	CAGACCCACCCCTC
rs3213239	CACCACCCTGTTTTCTCACCTT	AGGCCCAACTCCGTCTTG	CAATGGGCCGGCCGT	CAAACAACAATGGGCCGT
rs3213245	CGCGCTTGCGCACTTTAG	GCCAGAAGGATGAGGTAGAGTATG	CCCGCTCCCTCCCA	CCGCCCCCTCCCA
rs2307187	CCCCATACTCTACCTCATCCTTCTG	GCTGCAGGACACGACATG	CCGGCATGTCAACGT	TCCGGCATATCAACGT
rs25496	TGGGAATGATGGCTCAGCTTT	CCTGCTTACCTCATAGTCTTGCT	ACTGCCCACCAGCAC	TGCCCGCCAGCAC
rs1799782	AGGATGAGAGCGCCAACTC	ACTCAGGACCCACGTTGTC	TTGTTGATCCGGCTGAA	TTGTTGATCCAGCTGAA
rs1799780	CCATAGATAGGAGTGAAAGGGTCTTG	GCTGTGACTATGAAGGGAGAAAGTG	CAGGATGAGAGGGCTGA	CAGGATGAGAAGGCTGA
rs915927	TCCACTTTCTCCCTTCATAGTCACA	AGGGTAGCAGCTGCATAGC	CCAGCGACCCAGCAG	CCAGCGACCCGGCAG
rs25489	CCAGTGGTGCTAACCTAATCTACTCT	GCTCGGGCAGGGACTG	CTCCAACTCGTACCCC	TCCAACTCATACCCC
rs25487	GTGGGTGCTGGACTGTCA	GCAGGGTTGGCGTGTGA	CCTCCCGGAGGTAA	CCCTCCCAGAGGTAA
rs3213401	GAGTTGGTTCTCATCCAAGA	AAGATACAGGTGTGGCTCAG	*	*
rs2682558	CCTTATCCCTGTGTTGGCAAGAG	GGCTCAGAGGGCCAGAAAA	CAGATTCCCAGTTCCCT	CAGATTTCCAGTTCCCT
rs3547	TGTGTGTGTGTGTGTGTATAGCA	GCAGAAGTTACTTCCTCACCATCTC	CCGCAGGCCTGAAG	CCGCAAGCCTGAAG

Probes are not required because the variant allele involved deletion of 7 nucleotides which is sufficient to be detected by PCR product size.

ISSN: 2730-6844