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Table 1 Details of Sequence Analysis of 6 Selenoprotein Genes in a 102 Person Multi-ethnic Population Performed to Identify Single Nucleotide Polymorphisms

From: Polymorphism analysis of six selenoprotein genes: support for a selective sweep at the glutathione peroxidase 1 locus (3p21) in Asian populations

Gene Chromosome Exons Gene region 5'
3'
Intron
Total base pairs (bp) sequenced Total SNPs
NSYN
SYN
SECIS Region
SNPs/kbp NSYN/kbp
SYN/kbp
SNPs/kbp Gene coding region
GPX1 3p21.31 2 609 3359
3431
-
7399 38
3
1
0
5.136 4.926 1.642 6.568
GPX2 14q24.1 2 570 3001
2896
2666
9133 47
0
0
0
5.146 -
-
-
GPX3 5q33.1 5 678 2930
2030
2853
8491 52
0
1
0
6.124 -
1.475
1.475
GPX4 19p13.3 7 594 2453
1783
2177
7007 31
0
1
2
4.424 -
1.684
1.684
TXNRD1 12q23.3 13 1497 5341
3320
3722
13880 43
0
3
0
3.098 -
2.004
2.004
SEPP1 5p13.1 4 1143 2833
6231
2134
12341 24
2
0
0
1.945 1.750
-
1.750
Total   33 5091 53160 58251 235
5
6
0
4.034 0.982
1.179
2.161