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Table 1 Details of Sequence Analysis of 6 Selenoprotein Genes in a 102 Person Multi-ethnic Population Performed to Identify Single Nucleotide Polymorphisms

From: Polymorphism analysis of six selenoprotein genes: support for a selective sweep at the glutathione peroxidase 1 locus (3p21) in Asian populations

Gene

Chromosome

Exons

Gene region

5'

3'

Intron

Total base pairs (bp) sequenced

Total SNPs

NSYN

SYN

SECIS Region

SNPs/kbp

NSYN/kbp

SYN/kbp

SNPs/kbp Gene coding region

GPX1

3p21.31

2

609

3359

3431

-

7399

38

3

1

0

5.136

4.926 1.642

6.568

GPX2

14q24.1

2

570

3001

2896

2666

9133

47

0

0

0

5.146

-

-

-

GPX3

5q33.1

5

678

2930

2030

2853

8491

52

0

1

0

6.124

-

1.475

1.475

GPX4

19p13.3

7

594

2453

1783

2177

7007

31

0

1

2

4.424

-

1.684

1.684

TXNRD1

12q23.3

13

1497

5341

3320

3722

13880

43

0

3

0

3.098

-

2.004

2.004

SEPP1

5p13.1

4

1143

2833

6231

2134

12341

24

2

0

0

1.945

1.750

-

1.750

Total

 

33

5091

53160

58251

235

5

6

0

4.034

0.982

1.179

2.161