| Network #1a | Network #2 | Haplotype frequencies | |||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Haplotype | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | n = 188d | n = 172 | n = 78 | n = 102 | n = 40 |
# | 449b | 1392 | 1576 | 1701 | 4136 | 4450–4461c | 4732 | 4776 | 6811 | 8631 | 9162 | 9786 | 13793 | 13861 | 13925 | 17284 | 20720 | 20957 | 21680 | Bos taurus | Holstein | British | Continental | Indicus cpe |
1 | T | C | C | G | C | Z | G | C | A | A | T | T | G | C | G | G | T | C | T | 0.102 | - | 0.158 | 0.067 | 0.125 |
2 | T | C | C | G | C | Z | G | C | A | A | T | T | G | C | C | G | C | C | C | 0.100 | 0.264 | 0.083 | 0.099 | 0.075 |
3 | G | C | C | A | C | I | A | T | A | G | T | C | A | G | C | G | C | C | C | 0.087 | 0.059 | 0.044 | 0.088 | - |
4 | T | C | C | G | C | Z | G | C | A | A | T | T | G | C | C | G | C | C | T | 0.081 | - | 0.075 | 0.073 | 0.075 |
5 | T | C | C | G | C | Z | G | C | A | A | T | T | G | C | G | G | C | T | T | 0.071 | 0.030 | 0.079 | 0.029 | - |
6 | T | C | C | A | C | Z | G | C | A | G | T | T | A | C | C | G | C | C | T | 0.049 | - | 0.026 | 0.078 | 0.025 |
7 | G | C | C | A | T | I | A | C | A | G | C | C | A | G | C | G | C | C | T | 0.033 | - | 0.039 | - | - |
8 | T | C | C | G | C | Z | G | C | A | A | T | T | G | C | G | G | C | C | T | 0.027 | - | - | 0.069 | - |
9 | G | C | C | A | C | I | A | C | A | G | T | C | A | G | C | G | C | C | C | 0.027 | 0.042 | 0.074 | - | - |
10 | T | C | C | A | C | Z | G | C | T | A | T | T | G | C | G | G | C | T | T | 0.027 | - | 0.026 | 0.029 | - |
11 | T | C | C | G | C | Z | G | C | A | A | T | T | A | C | C | G | C | C | T | 0.024 | - | - | 0.029 | - |
12 | G | C | C | A | C | I | A | T | A | G | T | C | A | G | C | A | C | C | C | - f | 0.091 | - | - | - |
13 | G | C | C | A | C | I | G | C | A | G | T | C | A | G | C | G | C | C | C | - | 0.084 | - | - | - |
14 | T | C | C | G | C | Z | G | C | A | A | T | T | A | G | C | G | C | C | C | - | 0.053 | 0.036 | - | - |
15 | T | C | C | G | C | Z | G | C | A | A | T | T | A | C | C | G | C | C | C | - | 0.052 | - | - | - |
16 | G | C | C | A | T | I | A | C | A | G | C | T | A | G | C | G | C | C | T | - | 0.032 | - | 0.029 | - |
17 | T | C | C | A | C | I | G | C | A | G | T | T | A | G | C | G | C | C | T | - | 0.030 | - | - | - |
18 | G | T | C | A | T | I | A | C | A | G | T | T | A | C | C | G | C | C | T | - | - | - | 0.039 | - |
19 | T | C | T | A | C | I | G | C | A | G | T | T | A | C | C | G | C | C | T | - | - | - | - | 0.123 |
Total haplotype frequency | 0.628 | 0.737 | 0.640 | 0.629 | 0.423 |