Linkage disequilibrium blocks, haplotype structure, and htSNPs of human CYP7A1 gene

BMC Genomic Data

Table 2 Genotype frequencies of the 14 CYP7A1 SNPs in the four HapMap populations.

#	SNP ID	Variation Allele 1/2	CEU			CHB			JPT			YRI
			FA2	ObH	HW-p	FA2	ObH	HW-p	FA2	ObH	HW-p	FA2	ObH	HW-p
1	rs10504255	A/G	0.317	0.456	1.0	0.200	0.356	0.886	0.170	0.250	0.694	0.017	0.022	1.0
2	rs10957057	C/T	0.142	0.222	1.0	0.122	0.244	0.999	0.159	0.318	0.586	0.092	0.178	1.0
3	rs8192879	C/T	0.367	0.467	0.754	0.267	0.444	0.663	0.261	0.386	1.0	0.225	0.333	1.0
4	rs11786580	C/T	0.242	0.367	1.0	0.056	0.111	1.0	0.091	0.182	1.0	0.192	0.311	1.0
5	rs3747809	A/G	0	0		0.011	0.022	1.0	0.058	0.116	1.0	0	0
6	rs1457043	T/C	0.392	0.522	0.754	0.567	0.556	0.616	0.625	0.523	0.718	0.575	0.467	0.911
7	rs2162459	A/G	0.392	0.522	0.754	0.567	0.556	0.616	0.625	0.523	0.718	0.583	0.456	1.0
8	rs3808607	T/G	0.367	0.489	1.0	0.411	0.467	0.989	0.570	0.535	0.836	0.583	0.456	1.0
9	rs3824260	G/A	0.367	0.489	1.0	0.411	0.467	0.989	0.570	0.535	0.836	0.550	0.478	0.784
10	rs7833904	T/A	0.408	0.511	1.0	0.622	0.533	0.612	0.663	0.535	0.382	0.558	0.444	0.313
11	rs3903445	G/T	0.408	0.511	1.0	0.622	0.533	0.612	0.648	0.523	0.580	0.550	0.467	0.44
12	rs1125226	A/C	0.398	0.517	1.0	0.622	0.533	0.612	0.663	0.535	0.382	0.575	0.456	0.343
13	rs1023649	A/G	0.415	0.517	1.0	0.622	0.533	0.612	0.648	0.523	0.580	0.575	0.456	0.343
14	rs1023652	C/G	0.408	0.511	1.0	0.433	0.556	0.616	0.314	0.488	0.665	0.125	0.189	0.073

FA2: frequency of allele 2; ObH: observed frequency of heterozygous genotypes; HW-p: Hardy-Weinberg p value.

ISSN: 2730-6844