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Table 3 The significant haplotypes from the most significant QTL regions were analysed by TDT. The counts are the number of times that an allele was transmitted/not transmitted from a heterozygous parent carrying that allele to a hernia affected/not affected offspring. Nominal significance levels were used.

From: Genome-wide linkage analysis of inguinal hernia in pigs using affected sib pairs

Chromosome

Markers in the haplotype

Affected

Non-affected

TDT

P-value

  

Transmit.

Not transmit.

Transmit.

Not transmit.

  

SSC5

SW963-SWR1526

41

16

10

24

16.7

0.00004

SSC6

SW1355-SW1823-S0003

30

13

6

13

9.3

0.002

SSC15

SW919-SW1118

56

36

16

28

7.5

0.006

  

5

15

8

3

7.3

0.007

SSC17 _ 1

SW1891-SWR1120

5

15

8

3

7.3

0.007

SSC17 _ 2

S0359-S0332

58

26

21

22

8.6

0.003