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Table 2 Power for LRTae and LRTstd methods using permutation p-values

From: LRTae: improving statistical power for genetic association with case/control data when phenotype and/or genotype misclassification errors are present

Sgn Level

Power

Power Difference

 

LRTae

LRTstd

 

0.05

0.989

0.970

0.019

0.01

0.953

0.905

0.048

0.001

0.831

0.716

0.115

0.0001

0.677

0.532

0.145

  1. Legend for Table 2. In this table, we report the proportion of replicates (out of 10,000) whose permutation p-values for each method (LRTae, LRTstd) are less than the Significance Level (Column labeled Sgn Level) threshold. The thresholds we consider are 0.05, 0.01, 0.001, and 0.0001. We also report the Power Difference (Power(LRTae) – Power(LRTstd)) for each significance level.