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Table 2 Classification of the selection methods for the number of SNPs selected

From: Selection of SNP subsets for association studies in candidate genes: comparison of the power of different strategies to detect single disease susceptibility locus effects

 

Rank for number of SNPs selected

 

Method I (Johnson et al.)

Method II (Stram et al.)

Method III (Cousin et al.)

Method IV 0.5 (Carlson et al.)

Method IV 0.8 (Carlson et al.)

C3AR1

1

5

2

3

3

CCR2

1

2

4

3

4

CEBPB

2

2

1

2

5

CSF2

1

3

3

2

3

FCN3

1

2

2

2

2

FGL2

1

1

1

1

1

IFNG

2

5

3

1

3

IL13

1

3

3

2

3

IL24

1

3

2

3

3

IL9

1

4

1

1

4

LTA

1

4

3

1

5

LTB

1

2

2

2

2

MC1R

2

4

1

3

5

PLAU

2

4

1

3

5

PROCR

1

1

1

1

1

RELA

1

2

3

3

3

SERPINC1

1

5

1

3

4

TNF

2

4

1

2

5

TRADD

1

4

4

2

2

VTN

2

4

1

2

4

total

26

64

40

42

67

final rank

1

4

2

3

5