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Table 4 Mean of LD summaries. We show results for the mean value of summaries of LD behavior for ms and the SMC and SMC' algorithms. We simulated a 2 Mb region for a sample of size 500. Numbers shown are averaged over 1000 replicates. Markers with MAF less than 0.05 were excluded.

From: Fast "coalescent" simulation

Statistic ms SMC SMC'
H 404 404 404
R M 236 232 236
% seq. in hap. blocks 41.1 41.2 41.2