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Table 3 Run-times. Average time per simulation, as a function of sample size n, based on 20 trials, assuming θ = 10-4/bp and ρ = 5 * 10-4/bp. Simulations were run on a 2.8 GHz Intel Xeon processor. Dashes correspond to simulations that could not be completed because they required too much (> 3 GB RAM) memory.

From: Fast "coalescent" simulation

n Length (Mb) SMC ms
1000 2 0.9 7.2
  5 2.1 62.6
  10 4.3 473.6
  20 8.3 6459.6
  50 20.9 -
  100 41.6 -
  200 83.9 -
4000 2 4.0 10.6
  5 10.4 -
  10 22.2 -
  20 40.7 -
  50 105.8 -
  100 201.5 -
  200 406.1 -