Table 3 Run-times. Average time per simulation, as a function of sample size n, based on 20 trials, assuming θ = 10-4/bp and ρ = 5 * 10-4/bp. Simulations were run on a 2.8 GHz Intel Xeon processor. Dashes correspond to simulations that could not be completed because they required too much (> 3 GB RAM) memory.
n | Length (Mb) | SMC | ms |
|---|---|---|---|
1000 | 2 | 0.9 | 7.2 |
5 | 2.1 | 62.6 | |
10 | 4.3 | 473.6 | |
20 | 8.3 | 6459.6 | |
50 | 20.9 | - | |
100 | 41.6 | - | |
200 | 83.9 | - | |
4000 | 2 | 4.0 | 10.6 |
5 | 10.4 | - | |
10 | 22.2 | - | |
20 | 40.7 | - | |
50 | 105.8 | - | |
100 | 201.5 | - | |
200 | 406.1 | - |