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Table 2 Comparisons of regions with peak NPL scores 1.5 by chromosomes using microsatellite and SNP markers.

From: A comparison in association and linkage genome-wide scans for alcoholism susceptibility genes using single-nucleotide polymorphisms

  Microsatellite SNP
Chr Average information content Peak NPL score Position (cM) 1-LOD SI Average information content Peak NPL score Position (cM) 1-LOD SI
1 0.78     0.91 1.75 a 77.15  
       1.54 107.16  
       1.95 142.09 [139.92, 152.58]
       1.92 274.27  
2 0.78 2.23 4.9 [89.05, 133.01] 0.92 2.33 18.03  
   2.24 94.2    3.72 90.60 [88.14, 95.20]
       2.99 112.07  
       1.98 135.49  
       2.59 244.44  
3 0.71     0.91 1.70 60.44  
       2.10 111.82  
       2.13 144.53 [137.26, 144.57]
4 0.71     0.92 2.59 204.47 [204.32, 204.47]
5 0.74     0.92    
6 0.67 1.56 112.9 [99.83, 127.70] 0.89 2.03 116.07 [110.71, 117.21]
       1.74 185.42  
7 0.84 2.66 49.3 [40.96, 53.37] 0.92 1.74 13.65  
   2.22 100.0 [82.55, 133.43]   2.72 31.68  
       1.96 54.08  
       2.81 101.05 [93.83, 107.52]
       2.04 123.79  
8 0.76     0.92 2.24 21.97 [9.69, 24.13]
       2.14 42.16  
9 0.68     0.91 2.13 141.17 [128.25, 151.24]
10 0.64     0.90 1.57 47.31  
       2.85 106.69  
       1.87 128.63  
       3.08 171.41 [153.97, 175.87]
11 0.67 2.20 119.8 [99.24, 133.20] 0.92 2.44 125.15 [118.83, 130.89]
12 0.77 2.04 169.8 [154.18, 177.30] 0.91 2.08 86.43 [80.88, 88.63]
       1.64 122.16  
13 0.74 1.49 97.3 [80.03, 113.50] 0.92 2.26 86.87 [83.80, 97.69]
14 0.72     0.91 1.66 23.73 [17.41, 25.95]
       1.66 88.50  
15 0.75     0.91    
16 0.69     0.89    
17 0.66     0.89    
18 0.65     0.91 2.19 106.82 [92.47, 111.48]
19 0.66     0.87    
20 0.73     0.90 1.74 5.81 [0.16, 7.60]
21 0.76 1.66 62.7 [25.20, 62.70] 0.91    
22 0.62     0.87 1.57 28.51 [22.77, 34.11]
23 0.82     0.91 3.21 42.78 [36.37, 43.43]
Overall average (SD) 0.74 (0.095)     0.91 (0.094)    
  1. aGray text indicates local maximums in the region, while black text indicates the global maximum.