Skip to main content

Table 1 Estimated delta parameters in the presence and absence of LD

From: Bias of allele-sharing linkage statistics in the presence of intermarker linkage disequilibrium

  Simulated   Founders genotyped Founders ungenotyped
Chromosome Gene LD LD reduction Mean ± SD Mean ± SD
2 No Yes Not reduced 0.00 ± 0.09 0.06 ± 0.10
    Reduced 0.00 ± 0.09 0.04 ± 0.10
4 No No Not reduced 0.00 ± 0.12 0.00 ± 0.11
    Reduced 0.00 ± 0.12 0.00 ± 0.12
3 Yes Yes Not reduced 0.36 ± 0.09 0.38 ± 0.09
    Reduced 0.36 ± 0.09 0.38 ± 0.10
1 Yes No Not reduced 0.48 ± 0.09 0.46 ± 0.09
    Reduced 0.48 ± 0.09 0.47 ± 0.09
  1. 100 replicates, allele frequencies from file, statistics calculated at five evenly spaced intervals between markers.