From: Bias of allele-sharing linkage statistics in the presence of intermarker linkage disequilibrium
Simulated | Founders genotyped | Founders ungenotyped | |||
---|---|---|---|---|---|
Chromosome | Gene | LD | LD reduction | Mean ± SD | Mean ± SD |
2 | No | Yes | Not reduced | 0.00 ± 0.09 | 0.06 ± 0.10 |
Reduced | 0.00 ± 0.09 | 0.04 ± 0.10 | |||
4 | No | No | Not reduced | 0.00 ± 0.12 | 0.00 ± 0.11 |
Reduced | 0.00 ± 0.12 | 0.00 ± 0.12 | |||
3 | Yes | Yes | Not reduced | 0.36 ± 0.09 | 0.38 ± 0.09 |
Reduced | 0.36 ± 0.09 | 0.38 ± 0.10 | |||
1 | Yes | No | Not reduced | 0.48 ± 0.09 | 0.46 ± 0.09 |
Reduced | 0.48 ± 0.09 | 0.47 ± 0.09 |