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Table 2 Accuracy of population-based haplotype estimates in 5-SNP, 10-SNP, and 14-SNP haplotypes.

From: Accuracy of haplotype estimation in a region of low linkage disequilibrium

# SNPs incorporated

Algorithm

I H

I F

Overall error rate

5 SNPs

PHASE

0.788

0.837

0.275

 

HAPLO.STATS

0.765

0.850

0.287

10 SNPs

PHASE

0.525

0.465

0.687

 

HAPLO.STATS

0.361

0.293

0.855

14 SNPs

PHASE

0.225

0.189

0.900

 

HAPLO.STATS

0.136

0.092

0.950

Truncated at 5th SNP

    

10 SNPs

PHASE

0.882

0.856

0.200

 

HAPLO.STATS

0.811

0.881

0.262

14 SNPs

PHASE

0.857

0.875

0.237

 

HAPLO.STATS

0.703

0.850

0.337