From: Accuracy of haplotype estimation in a region of low linkage disequilibrium
# SNPs incorporated | Algorithm | I H | I F | Overall error rate |
---|---|---|---|---|
5 SNPs | PHASE | 0.788 | 0.837 | 0.275 |
HAPLO.STATS | 0.765 | 0.850 | 0.287 | |
10 SNPs | PHASE | 0.525 | 0.465 | 0.687 |
HAPLO.STATS | 0.361 | 0.293 | 0.855 | |
14 SNPs | PHASE | 0.225 | 0.189 | 0.900 |
HAPLO.STATS | 0.136 | 0.092 | 0.950 | |
Truncated at 5th SNP | ||||
10 SNPs | PHASE | 0.882 | 0.856 | 0.200 |
HAPLO.STATS | 0.811 | 0.881 | 0.262 | |
14 SNPs | PHASE | 0.857 | 0.875 | 0.237 |
HAPLO.STATS | 0.703 | 0.850 | 0.337 |