From: Accuracy of haplotype estimation in a region of low linkage disequilibrium
5-SNP Haplotype Frequencies | |||
---|---|---|---|
Haplotype | MERLIN | PHASE | HAPLO.STATS |
22212 | 0.2188 | 0.225 | 0.2375 |
12212 | 0.1375 | 0.1438 | 0.1438 |
22121 | 0.125 | 0.0688 | 0.075 |
12121 | 0.1125 | 0.1563 | 0.1625 |
11121 | 0.0813 | 0.0938 | 0.0875 |
21121 | 0.0688 | 0.0688 | 0.0625 |
21212 | 0.05 | 0.075 | 0.0625 |
11212 | 0.0438 | 0.0063 | 0.0063 |
22222 | 0.0438 | 0.0438 | 0.0438 |
11222 | 0.0188 | 0.0313 | 0.0313 |
12222 | 0.0188 | - | - |
21211 | 0.0188 | - | 0.0188 |
22211 | 0.0188 | 0.0438 | 0.025 |
12122 | 0.0125 | - | - |
12211 | 0.0125 | - | - |
22221 | 0.0125 | 0.0188 | 0.0188 |
12221 | 0.0063 | - | - |
22111 | 0.0063 | 0.0063 | - |
22122 | -a | 0.0125 | 0.0125 |
11221 | - | 0.0063 | 0.0063 |
21111 | - | - | 0.0063 |