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Table 1 Frequency of population-based and family-based haplotypes using 14 Illumina SNPs with low LD

From: Accuracy of haplotype estimation in a region of low linkage disequilibrium

 

5-SNP Haplotype Frequencies

Haplotype

MERLIN

PHASE

HAPLO.STATS

22212

0.2188

0.225

0.2375

12212

0.1375

0.1438

0.1438

22121

0.125

0.0688

0.075

12121

0.1125

0.1563

0.1625

11121

0.0813

0.0938

0.0875

21121

0.0688

0.0688

0.0625

21212

0.05

0.075

0.0625

11212

0.0438

0.0063

0.0063

22222

0.0438

0.0438

0.0438

11222

0.0188

0.0313

0.0313

12222

0.0188

-

-

21211

0.0188

-

0.0188

22211

0.0188

0.0438

0.025

12122

0.0125

-

-

12211

0.0125

-

-

22221

0.0125

0.0188

0.0188

12221

0.0063

-

-

22111

0.0063

0.0063

-

22122

-a

0.0125

0.0125

11221

-

0.0063

0.0063

21111

-

-

0.0063

  1. a -, not applicable.