Table 1 Correlation between the true haplotype frequencies and those estimated by five programs

1

55,992,117

0.14

3

1

1

1

1

1

1

2

10,464,050

0.14

10

0.6

1

1

1

1

1

3

54,499,735

1.42

5

0.59

1

1

1

1

1

4

71,732,319

2.62

8

0.46

1

1

1

1

1

5

36,765,524

0.13

11

0.36

1

1

1

1

1

6

84,938,832

1.46

9

0.28

0.97

0.99

0.97

0.98

0.89

7

42,260,770

4.25

20

0.19

0.95

0.99

0.96

0.95

0.92

8

90,806,576

2.23

16

0.18

0.94

0.96

0.94

0.83

0.92

9

63,668,482

3.84

30

0.05

0.84

0.95

0.82

0.75

0.77

10

3,562,850

3.86

31

0.02

0.75

0.91

0.75

0.67

0.65

11

54,499,735

1.63

6

0.74

1

1

1

1

1

12

55,920,880

10.51

15

0.44

0.99

1

0.98

0.93

0.97

13

74,309,896

10.79

130

0.02

0.51

0.78

0.50

0.07

0.50

14

14,437,620

13.36

165

0.02

0.14

0.35

0.19

0.25

0.17