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Table 1 The percent agreement between selected SNPs across tag-SNP programs.

From: Identification of tag single-nucleotide polymorphisms in regions with varying linkage disequilibrium

 

SNPtagger

TagSNP

HTSNP

Nyholt

Meng

HB Finder

TagSNP a

87

     

HTSNP

95

88

    

Nyholtb

77

74

78

   

Meng

46

47

43

53

  

HB Finder c

62

65

63

65

46

 

Haploview

48 (67)d

45 (74)

47 (68)

47 (68)

54 (45)

26 (77)

  1. There are 100 SNPs in 10 regions.
  2. aBold, R2 or percent diversity based programs.
  3. bStandard, spectral decomposition programs.
  4. cItalics, block method programs.
  5. dParenthesis indicates the percent agreement when SNPs chosen by HAPLOVIEW included those outside of the Gabriel blocks.
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BMC Genomic Data

ISSN: 2730-6844

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