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Table 1 The percent agreement between selected SNPs across tag-SNP programs.

From: Identification of tag single-nucleotide polymorphisms in regions with varying linkage disequilibrium

  SNPtagger TagSNP HTSNP Nyholt Meng HB Finder
TagSNP a 87      
HTSNP 95 88     
Nyholtb 77 74 78    
Meng 46 47 43 53   
HB Finder c 62 65 63 65 46  
Haploview 48 (67)d 45 (74) 47 (68) 47 (68) 54 (45) 26 (77)
  1. There are 100 SNPs in 10 regions.
  2. aBold, R2 or percent diversity based programs.
  3. bStandard, spectral decomposition programs.
  4. cItalics, block method programs.
  5. dParenthesis indicates the percent agreement when SNPs chosen by HAPLOVIEW included those outside of the Gabriel blocks.
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BMC Genomic Data

ISSN: 2730-6844

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