Chr | Mean information content (SD) | |||||
---|---|---|---|---|---|---|
SNP (excluding erroneous genotypes) | SNP (including erroneous genotypes) | Microsatellites (excluding erroneous genotypes) | Microsatellites (including erroneous genotypes) | SNP 1 cM subset (excluding erroneous genotypes) | SNP 1 cM subset (including erroneous genotypes) | |
1 | 0.951 (0.020) | 0.947 (0.020) | 0.821 (0.073) | 0.821 (0.072) | 0.914 (0.040) | 0.909 (0.045) |
2 | 0.955 (0.017) | 0.952 (0.017) | 0.831 (0.082) | 0.830 (0.081) | 0.918 (0.040) | 0.914 (0.041) |
3 | 0.954 (0.016) | 0.951 (0.016) | 0.745 (0.086) | 0.745 (0.086) | 0.917 (0.042) | 0.914 (0.044) |
4 | 0.953 (0.028) | 0.949 (0.028) | 0.763 (0.036) | 0.761 (0.036) | 0.921 (0.046) | 0.916 (0.055) |
5 | 0.954 (0.018) | 0.951 (0.019) | 0.791 (0.078) | 0.789 (0.078) | 0.916 (0.043) | 0.913 (0.046) |
6 | 0.954 (0.017) | 0.951 (0.016) | 0.784 (0.080) | 0.782 (0.079) | 0.921 (0.031) | 0.918 (0.033) |
7 | 0.953 (0.014) | 0.950 (0.015) | 0.879 (0.062) | 0.878 (0.061) | 0.916 (0.031) | 0.912 (0.033) |
8 | 0.954 (0.016) | 0.950 (0.017) | 0.801 (0.079) | 0.800 (0.078) | 0.916 (0.033) | 0.911 (0.039) |
9 | 0.956 (0.020) | 0.951 (0.020) | 0.763 (0.088) | 0.764 (0.089) | 0.916 (0.042) | 0.911 (0.045) |
10 | 0.953 (0.015) | 0.950 (0.015) | 0.662 (0.084) | 0.662 (0.084) | 0.917 (0.036) | 0.914 (0.040) |
11 | 0.936 (0.017) | 0.933 (0.019) | 0.699 (0.054) | 0.698 (0.055) | 0.910 (0.035) | 0.903 (0.046) |
12 | 0.952 (0.021) | 0.947 (0.023) | 0.807 (0.086) | 0.806 (0.086) | 0.906 (0.062) | 0.899 (0.066) |
13 | 0.951 (0.027) | 0.948 (0.027) | 0.791 (0.092) | 0.792 (0.092) | 0.916 (0.056) | 0.913 (0.057) |
14 | 0.947 (0.032) | 0.942 (0.032) | 0.762 (0.048) | 0.761 (0.047) | 0.909 (0.050) | 0.902 (0.054) |
15 | 0.949 (0.017) | 0.945 (0.017) | 0.801 (0.032) | 0.801 (0.033) | 0.907 (0.038) | 0.903 (0.038) |
16 | 0.937 (0.045) | 0.933 (0.045) | 0.738 (0.089) | 0.737 (0.088) | 0.877 (0.077) | 0.867 (0.093) |
17 | 0.930 (0.050) | 0.926 (0.049) | 0.705 (0.082) | 0.704 (0.082) | 0.859 (0.061) | 0.851 (0.073) |
18 | 0.949 (0.017) | 0.945 (0.017) | 0.678 (0.040) | 0.678 (0.039) | 0.895 (0.049) | 0.889 (0.050) |
19 | 0.902 (0.074) | 0.899 (0.073) | 0.709 (0.041) | 0.710 (0.042) | 0.759 (0.142) | 0.747 (0.149) |
20 | 0.941 (0.028) | 0.936 (0.029) | 0.750 (0.115) | 0.750 (0.115) | 0.879 (0.062) | 0.873 (0.067) |
21 | 0.948 (0.026) | 0.945 (0.026) | 0.780 (0.074) | 0.780 (0.075) | 0.899 (0.043) | 0.892 (0.053) |
22 | 0.904 (0.046) | 0.901 (0.046) | 0.644 (0.131) | 0.644 (0.130) | 0.794 (0.101) | 0.786 (0.102) |
Overall | 0.9500 (0.025) | 0.9465 (0.025) | 0.7828 (0.092) | 0.7822 (0.092) | 0.910 (0.051) | 0.9046 (0.056) |