Skip to main content

Table 1 NPL*, IC*, and 1-LOD linkage interval for chromosomal regions attaining nominal significance and fine-mapped linkage results.

From: Linkage and association analyses of microsatellites and single-nucleotide polymorphisms in nuclear families

Pop.

Chr.

Scan

Marker

Position (cM)

NPLa

ICa

1-LOD interval

NPL, IC, and 1-LOD linkage intervals

AI

1

MSa

D01S0025

181.59

3.64

0.93

62

 

1

SNPa

C01R0053

172.08

3.84

0.86

51

 

3

MS

D03S0127

295.84

6.6

0.92

22

 

3

SNP

C03R0280

295.89

5.53

0.8

26

 

4

MS

D04S0158

210.27

2.71

0.93

--

 

4

SNP

C04R0349

212.91

1.78

0.83

--

 

5

MS

D05S0173

9.69

4.53

0.94

23

 

5

SNP

C05R0379

3.07

3.71

0.7

30

 

6

MS

D06S0229

90.19

1.98

0.92

--

 

6

SNP

C06R0510

112.24

2.09

0.83

--

 

7b

SNP

C07R0666

299.48

1.77

0.73

--

 

8

MS

D08S0328

175.32

2.49

0.92

137

 

8

SNP

C08R0721

172.14

2.43

0.86

160

 

9

MS

D09S0348

10.28

3.92

0.91

50

 

9

SNP

C09R0770

20.28

3.28

0.76

52

DA

1

MS

D01S0024

173.88

7.63

0.93

33

 

1

SNP

C01R0052

169.6

8.55

0.88

23

 

3

MS

D03S0127

295.84

5.24

0.92

7

 

3

SNP

C03R0281

298.31

4.5

0.79

33

 

5b

MS

D05S0187

107.45

2.17

0.95

114

 

6b

SNP

C06R0506

95.16

2.61

0.83

60

 

7

MS

D07S0272

86.83

2.05

0.94

--

 

7

SNP

C07R0623

160.4

2.08

0.86

--

 

8

MS

D08S0341

265.38

3.11

0.91

47

 

8

SNP

C08R0749

261.07

1.89

0.82

--

 

9b

MS

D09S0348

10.28

1.81

0.89

--

 

10

MS

D10S0406

115.16

2.91

0.94

74

 

10

SNP

C10R0893

114.09

2.66

0.82

84

KA

1

MS

D01S0018

129.21

1.92

0.95

--

 

1

SNP

C0140053

172.08

2.01

0.87

--

 

2

MS

D02S0051

67.03

3.06

0.94

26

 

2

SNP

C02R0113

68.97

2.90

0.83

37

 

3

MS

D03S0127

295.84

6.12

0.92

12

 

3

SNP

C03R0281

298.31

6.34

0.84

15

 

4

MS

D04S0158

210.27

2.08

0.93

--

 

4

SNP

C04R0348

209.3

1.77

0.86

--

 

5

MS

D05S0173

9.69

7.49

0.95

21

 

5

SNP

C05R0380

5.74

7.15

0.85

21

 

9

MS

D09S0347

2.77

7.19

0.92

23

 

9

SNP

C09R0765

5.83

6.3

0.78

23

Pop.

Chr.

Scan

Marker

Position (cM)

NPL

IC

1-LOD interval

Fine-mapped linkage results

AI

3

153c + MS + SNP

B03T3055

297.14

7.4

0.99

 
 

5

208c + MS + SNP

B05T4142

7.57

5.71

0.97

 

DA

1

28c + 29c + MS + SNP

B01T0561

169.7

9.46

0.98

 
 

3

153c + MS+ SNP

B03T3057

297.71

6.46

0.99

 

KA

3

153c + MS+ SNP

C03R0281

298.31

7.38

0.97

 
 

5

207c + 208c + MS + SNP

B05T4136

5.22

8.87

0.99

 
 

9

417c + MS + SNP

B09T8337

5.98

8.36

0.96

 
  1. aNPL, Maximum nonparametric linkage scores; IC, information content; MS, microsatellites; SNP, single-nucleotide polymorphisms.
  2. bOnly results from one scan was reported because the other scan did not reach nominal significance.
  3. cPacket number